<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25568

Description "Heat shock protein, putative"
SequenceMAKSEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMKHWPFKVVPGPGDKPMIVVLYKGEEKQFSPEEISSMVLIKMKEIAEAYLGQTVKNAVITVPAYFNDSQRQATKDAGAISSLNVMRIINEPTAAAIAYGLDKKGSRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISTNARALRRLRTACERAKRTLSSTSQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVDDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVAAEDKTAGVKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEQVKKKVEAKNSLENYAYNMRNTVKDEKFAGKLDPSDKQKIEKAINETVEWLDGNQLAEVEEFEDKLKELEGLCNPIIAKMYQGGAAGDVPMDGADMPNGGYGAKASSGGAGAGPKIEEVD
Length655
PositionUnknown
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.06
Grand average of hydropathy-0.429
Instability index34.60
Isoelectric point5.23
Molecular weight71865.66
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
2-alkenal reductase [NAD(P)+] activity	GO:0032440	IEA:UniProtKB-EC
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25568
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.25|      21|     106|      39|      67|       1
---------------------------------------------------------------------------
   15-   37 (33.97/16.02)	TTYSCVGVWQNDRveIIANDQGN
   39-   59 (37.51/19.13)	TTPSYVAFTDTER..LIGDAAKN
   70-   77 ( 1.78/ 9.33)	.......F.DAKR..LIG.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.03|      14|      74|     511|     528|       3
---------------------------------------------------------------------------
  113-  126 (24.48/ 9.90)	EEKQFSPEEISSMV
  511-  524 (23.54/19.83)	DKGRLSKEEIEKMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     206.90|      54|     104|     452|     506|       4
---------------------------------------------------------------------------
  452-  506 (88.18/47.54)	RARTKDNNLLGKFELTGiPPAPRGVPQ.INVCFD.IDANGILNVAA.EDK...TAGVKNKI
  555-  611 (61.92/29.11)	RNTVKDEKFAGKLD....PSDKQKIEKaINETVEwLDGNQLAEVEEfEDKlkeLEGLCNPI
  613-  651 (56.80/26.19)	..........AKMYQGG...AAGDVPM.DGA..D.M.PNGGYGAKA.SSG...GAGAGPKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25568 with Med37 domain of Kingdom Viridiplantae
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