<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25564

Description "CRP, putative"
SequenceMQRYHAASCTGAVNNNVIVGASVRDTVRADPSSLAANFPINSRRPPPLTPYKLKCDKEPLNSRLGPPDFHPQTPNCPEETLTREYVQSGYRETVEGLEEAREISLSQVQAFSSKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLAKPGVFPEQKPCGEDFKKKWIEGLSQPHKRLRSLADHVPHGYRKKSLFEVLIRNNVPLLRATWFIKVTYLNQVRPSSASISSGTPDKTQLSRTELWTKDVIEYLQILLDEFFSRNNSHSALHTRDRSPQMLYAGSVQYRSDPATFSIDGEEPSLHFKWWYVVRLLHWHHSEGLLLPSIIIDWVLSQLQEKDLLEILQLLLPIIYGVLDSVVLSQTYVRTLAGIAVHYIREPSPGGSDLVDNSRRAYTTSALIEMLRYLILAVPDTFVAVDCFPLPPSVMSYAVNDGVFVSRASEEARKTKDNSAGVVGVFRSKGLDAQYQSFSFNQVVLSIQKREDNLAKAACPGYLVHSAAKAVQALDKALILGDIKEAYNFLFENFCDGAVDGGWIEEVSPCLRSSLKWMGSVDLSFVCSVFFLCEWATCDYRDFRTAPPHDLKFTGRKDFSQVYIATRLLKLKFRDLQSKPRRKNEKSLGINSLAKGLSQHNYVGRAHVRSGYETIGNSKIVNAKSTNSSDIFESPGPLHDIIVCWIDQHEVQKREGLKRLQLLIVELIRSGIFYPQSYVRQLIISGIMDANVPAVELDRRKRHYQILKQLPGLFIHDILEEARIAEGPELLEAMLIYSNERRLLLCGILSEQCQDSVKSNISVQKQKHHTTSIKDSASSASFDQWRTIQSQSNLLTKKIKRNADIKELKSSISLLLQLPNLSSSSDTGLEESQSSVKRAAESISNKMDLFEGTPGCEDCRRAKRQKLSEERSSCLQGHSPISDDDDSWWMRKGTKSLDSSKVDVPLKSSKQVSKGRQKVVRKTQSLAQLAAARIEGSQGASTSHVCDNKVSCPHHKSGMEGEKSVDGIKTLHGGDIVSIGKALKQLRFVEKRSITVWLVTAVKQLVEEAERTAIKSSQFSRSFVPADDRSSIRWKLGEDELSAVLYVMDVCNDLVSAAKLLLWLLPKVVSNHNSTIHSGRNTMMLPRNVENHACEVGEAFLLSCLRRYENTFVATDLVPEVLTTAVQRVLALLTSNGRVSGSAALTYSRYLLKKYGNVPSVLEWEKNSKSTYDKRLLSELEPSRSLDGESGFPLGVPAGVEDLDDFLRQKISGNRITRAGMSMRDLVQRQIEEAFHYFFGKERKVFGAGIQKSSGHEKSDDGYQIAQQITMGLMECIRQTGGAAQEGDPSLVSSAVAAIVNNVGPTIAKMPDFSVTTNYSNASSATTSLNVARRILRIHISCLYLLKEAFGERQSRVFEIALATEASSALATAFAPGKASRSQFQMSPDDSNANVPNEMLNNSGRPGRVTKSAAAISALIVGAVIHGVTSLERMVTVLKLKEGLDVIQFIRSTKSTSNGNARMVPALKVDNSIEIYVHWFRLLIGNCRTVSDGLVVELLGEPSIVALSRMQRMLPLSLVFPPAYSIFAFVIWRQIILSKELANREDINQLYQSLIMAIGDAIKHLPFRDVCLRDSQGFYDLVAADVSDADVASMLNALDMHSKSAAFVPLRGRLFLNAIIDCKMPESLCTQDDSNRLFGLGGSKVQHAESELKLLDKLVNVLDTLQPAKFHWQWVELRLLLNEQALVEKLETHDMSLADAIRSSSPGPEKAAASENENNFIVIILTRLLVRPDAASLFSELVHLFGRSLEDSMLLQAKWFLGGQDVLFGRKTIRQRLTIIAESKNLSTKAQFWKPWGWCRSGLDPVTNRGERKKFEVTSLEEGEVVEDGTDTKRSGKVSPQMLESEGFNISQQYMTERALIELVLPCIDQGSDESRNTFASDLIKQLNNIELLIAARGASKQTGSASSGLEGPVNKGNSRKVIRGGSPGMNRRTTGAADSTLPSPAVLRTSMLLRLQLLLRLLPVICTDGEPSGRNMRHMLACVILRLLGNRVVHEDADLSFYPMKSSQSKVEVESTLEVASTDSPGESLFDRLLLVLHGLLSSSQPSWLKSRSASKLMNEFSKDSSGIDRELVETLQNDLDRMQLPGSIRWRIQAAMPVLLPSARWSISCQLPTVPIAAVASLQPSITISGLYAGMPPQKNPLPLARTTNVPGRSKSLPLQQDNDMEIDPWTLLEDGTGSGPSSSNAAVVSGGDHANLRASAWLKGAVRVRRTDLTYIGAVDDDN
Length2264
PositionKinase
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.07
Grand average of hydropathy-0.236
Instability index51.37
Isoelectric point8.81
Molecular weight250871.01
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25564
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.14|      20|      20|      39|      58|       1
---------------------------------------------------------------------------
   39-   58 (40.48/26.94)	PINSR.RPPPLTPYKLKCDKE
   59-   79 (38.67/25.34)	PLNSRlGPPDFHPQTPNCPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.48|      19|      24|     313|     335|       2
---------------------------------------------------------------------------
  306-  325 (32.33/14.04)	PSLHFKwWYVVRLLHWHHSE
  330-  348 (32.16/24.14)	PSIIID.WVLSQLQEKDLLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.35|      21|      22|    1673|    1693|       4
---------------------------------------------------------------------------
 1673- 1693 (35.13/18.56)	NRLFGLGGSKVQHAESELKLL
 1698- 1718 (39.23/21.53)	NVLDTLQPAKFHWQWVELRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.32|      20|      25|    1997|    2016|       7
---------------------------------------------------------------------------
 1997- 2016 (37.28/22.79)	LLRLLP..VICTDGEPSGRNMR
 2023- 2044 (31.04/17.68)	ILRLLGnrVVHEDADLSFYPMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.67|      20|      20|     519|     538|      10
---------------------------------------------------------------------------
  519-  538 (37.03/21.87)	GDIKEAYNFLFENFC.DGAVD
  540-  560 (32.64/18.42)	GWIEEVSPCLRSSLKwMGSVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.76|      14|      22|    1536|    1555|      13
---------------------------------------------------------------------------
 1541- 1555 (19.36/27.55)	SIVALSrMQRMLPLS
 1563- 1576 (24.39/ 9.63)	SIFAFV.IWRQIILS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.11|      13|      22|    1236|    1249|      14
---------------------------------------------------------------------------
 1236- 1249 (17.44/16.75)	AGVeDLDDFLRQKI
 1257- 1269 (22.67/15.89)	AGM.SMRDLVQRQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      14|      22|     482|     495|      15
---------------------------------------------------------------------------
  482-  495 (22.35/14.77)	VLSIQKREDNLAKA
  502-  515 (22.20/14.61)	VHSAAKAVQALDKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.14|      21|      22|    1852|    1872|      16
---------------------------------------------------------------------------
 1852- 1872 (34.24/23.10)	KFEVTSLE.EGEVVEDGTDTKR
 1875- 1896 (32.91/21.90)	KVSPQMLEsEGFNISQQYMTER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.35|      13|      24|    1935|    1947|      17
---------------------------------------------------------------------------
 1935- 1947 (21.72/11.08)	RGASKQTGSASSG
 1962- 1974 (24.63/13.60)	RGGSPGMNRRTTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.08|      21|      22|    1387|    1407|      18
---------------------------------------------------------------------------
 1387- 1407 (32.21/22.53)	AFGERQSRVFEIALATEASSA
 1411- 1431 (35.86/26.11)	AFAPGKASRSQFQMSPDDSNA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25564 with Med12 domain of Kingdom Viridiplantae
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