<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25560

Description "Protein binding protein, putative"
SequenceMDNTSQSSGTQFRPAQQGQPFMPQQFLPVVQGMPSNVGMPMPAGQTQTLQFSQPMQPPPWPNHPAHVAPSSQPVPLPPYVHQNRPPLTSGPPQLQQTASLFAPSSYGQLQNNAISSSQFQPMPQMHTPVVPAGGQHWLPSGSNGVAVATPVQPTGQQPSVSSSSDSVLNVPNQQSLSDWQEHTASDGRRYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFTTPEGKKYYYNKITKQSKWSMPDELKLAREQAQQTATQGTKSEADAASHASVTVNASSGEMSTTVIPVGSGFSSTSGVASSPVPVTPVVAVSNPVAAVSSSSALPVAQSIIANAAGVQPPAVTMTVLPAAAGGFDNVASKGAAPSVDGASIQNSEEVKKGSGVSIKSDANLTEEKNLDDEPLTFASKQEAKNAFKALLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKRAREEFTKMLEESKELTSSMKWSKAVSLFENDERFKAVEKARDREDLFDNYIVELERKEREKAAEDHRRNVTEFKKFLESCDFIKVNSQWRKVQDRLEDDERCLRLEKLDRLLVFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDGFRKLLEEHVADGSLTAKAHWLDYCLKVKDLPQYHAVATNTSGSTPKDLFEDVAEELEKQYRDDKARVKDAIKSGKIIMTSTWIFEDFKAAILDDVSSPPVSDINLQLIYDELLERAKEKEEKEAKKRQRLADDLTKLLHTYKEIMASSSWEDCRPLFEESQEYRAIGEESVIKEIFEEYIAHLQEKAKEKERKREEEKVKKEKEREEKEKRKERERKEKEKEREREKAKERIKKDETDSENVDTTDSYGHKEDKKREKDKDRKHRKRHHSGTDEVSSDKDEKEESRKSRKHSSDRKKSRKHSYTPESDSENRHKKHKRDQRESSRKNGDYDDLEDGELGEDGEIQ
Length970
PositionUnknown
OrganismRicinus communis (Castor bean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Acalyphoideae> Acalypheae> Ricinus.
Aromaticity0.06
Grand average of hydropathy-1.089
Instability index55.66
Isoelectric point6.33
Molecular weight110507.71
Publications
PubMed=20729833

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25560
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.63|      38|      38|     178|     215|       1
---------------------------------------------------------------------------
  178-  215 (75.55/44.47)	DWQEHTASDGRRYYYNKRTKQSSWEKPLELMTPLERAD
  219-  256 (73.08/42.78)	VWKEFTTPEGKKYYYNKITKQSKWSMPDELKLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     184.82|      32|      32|     876|     907|       2
---------------------------------------------------------------------------
  826-  842 (20.26/ 6.37)	KEKeREEKE.KRKERER.................K
  843-  872 (34.17/16.65)	.EK.EKERE.REKAKER..IKKDETDSENVdTTDS
  873-  904 (52.00/29.82)	YGH.KEDKK.REKDKDRKHRKRHHSGTDEV.SSDK
  905-  934 (38.77/20.05)	DEK.EESRKsRKHSSDRK.KSRKHSYTPE...SDS
  935-  967 (39.61/20.67)	ENRhKKHKR.DQRESSRKNGDYDDLEDGEL.GEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     442.39|      65|      65|     476|     540|       3
---------------------------------------------------------------------------
  413-  472 (75.68/40.23)	....AKNAF.KALLE...SANVQSDWTWEQTMREIINDKRYGAL...KTLGERKQAFNEYLGQRKKIEAEE
  476-  540 (102.74/57.08)	RQKRAREEFTKMLEE...SKELTSSMKWSKAVSLFENDERFKAV...EKARDREDLFDNYIVELERKEREK
  544-  607 (92.20/50.52)	DHRRNVTEFKKFLES...CDFIKVNSQWRKVQDRLEDDERCLRL...EKL.DRLLVFQDYIRDLEKEEEEQ
  618-  688 (80.79/43.42)	AERKNRDGFRKLLEEhvaDGSLTAKAHWLDYCLKVKDLPQYHAVatnTSGSTPKDLFEDVAEELEKQYRDD
  752-  815 (90.98/49.76)	RQRLA.DDLTKLLHT...YKEIMASSSWEDCRPLFEESQEYRAI...GEESVIKEIFEEYIAHLQEKAKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     243.31|      32|      33|      40|      71|       4
---------------------------------------------------------------------------
    6-   36 (27.66/12.27)	.....QSS.....GTQFRP...AQ.QGQPFmPQQflPvVQG.MPSN
   40-   71 (62.22/37.42)	PMPAGQTQ.....TLQFSQ...PM.QPPPW.PNH..P.AHV.APSS
   75-  105 (40.11/21.33)	PLP...PY.....VHQNRP...PLtSGPPQ.LQQ..T.ASLfAPSS
  107-  133 (26.80/11.64)	....GQLQnnaisSSQF........QPMPQ.MHT..P...V.VPAG
  137-  164 (47.54/26.73)	WLPSG.SN.....GVAVAT...PV.QPTG...QQ..P.S.V.SSSS
  290-  324 (38.99/20.51)	PVGSGFSS.....TSGVASspvPV.TPVVA.VSN..P.VAA.VSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.18|      16|      22|     327|     342|       5
---------------------------------------------------------------------------
  327-  342 (28.01/19.61)	LPVAQSIIANAA..GVQP
  350-  367 (24.16/15.95)	LPAAAGGFDNVAskGAAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.95|      13|      22|     689|     701|       8
---------------------------------------------------------------------------
  689-  701 (20.42/13.76)	KARVKDAIKSGKI
  713-  725 (21.53/14.95)	KAAILDDVSSPPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25560 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAPSVDGASIQNSEEVKKGSGVSIKSDANLT
2) KAKEKERKREEEKVKKEKEREEKEKRKERERKEKEKEREREKAKERIKKDETDSENVDTTDSYGHKEDKKREKDKDRKHRKRHHSGTDEVSSDKDEKEESRKSRKHSSDRKKSRKHSYTPESDSENRHKKHKRDQRESSRKNGDYDDLEDGELGEDGEIQ
3) LQNNAISSSQFQPMPQMHTPVVPAGGQHWLPSGSNGVAVATPVQPTGQQPSVSSSSDSVLNVPNQQSLSDWQEHTASDGRRYYYNKR
4) MDNTSQSSGTQFRPAQQGQPFMPQQFLPVVQGMPSNVGMPMPAGQTQTLQFSQPMQPPPWPNHPAHVAPSSQPVPLPPYVHQNRPPLTSGPPQLQQTASLFAPSSYG
5) SMPDELKLAREQAQQTATQGTKSEADAASHASVTVNA
365
811
109
1
243
395
970
195
107
279










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYNKI
228
236