<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25551

Description Uncharacterized protein
SequenceMMEDKSFKGLKVEGMTSQRQDWRAELTSEVRKKVVEKILGNLKDHYKMQASSDPEFLNRLRNIAVQFEDKTFRNSATQGSYAYTIGKKMGSFGTIKSEASQTTGKNPSGLGQTSIVNDVGQSSETNAIAQFSQYLVGNNLVEQNMQPNMSPDFQSEVPGSQSSDQKLMYQLQQQEFQDQILKDKVQNISKRFAIQPDIHNRQPHQRQKHVTSQTSQNLYSQPPSASPQYQQSSFSQPSNSTMFQQNQQLRQQHDASEQRQWSMPQQNVLPSFQQPLGQQRDVSEIQHQQKMAGPQSIILNSQLHQSSSHMIQQQGVTASEQKVQKITQPVQSHQILGSQKQSGLSQEGIQPRPQTSASFHQQRSIADQQKLFQSHRSFAGSSSASAEPKSSNQLANTADGHDADYQKLQDFKQQYRPQMEYIYKNLKSLLDKETDPDQAMRYMKQVIWIEKNMPIFSLQRNQMANASKEKLQMAQQAIIKFVNYFRKKSSASVEQQADLCLQNSGQSQISQPPLNWNEKLQFHPVNLTMTNGLGSSSLTSSMQSGFLNSRPSFFSSLQYSSGMDLEQRNGPSMVQQPARKTGIISSNNIVNAFDSPFAHQTTLTQNLEQQMQKQNIQHKKEQMLIRNSQKSGSPAMESPENLHLPLISTTIHQPHSSSPRKSQLSSARMDQQTFPLASPASTPLTSTSEYVAFNQVDSQTQSHNQSTASGTPGISASPLLEEYTSSPNTSDTNQPLQRLLQAVKSLSPDVLSAAVHDIDSVVNVVDKIAGGSAERHSKGAIGEDLVSETIFHVQERNFALQHLSMKDKEMEHQSNAMASDTIGQPMDWISDFDSTATSRFNKLRTEPRNDLLNEIRHVNKLLVETTVDVDSTEDDSLPEASAGTIIKCSYTAVAVSGDFKSLSSSPMFPELTLRLLVPAEFPNSSPIILDKLPSGLSDELEDLSEKTKLRFSVALRNLSEPMSLLEIARTWDACARAVLLEHVKPLGGECFSSRYGTWENCLTA
Length1004
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.720
Instability index60.10
Isoelectric point6.62
Molecular weight112151.78
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25551
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     271.22|      40|      41|     192|     231|       1
---------------------------------------------------------------------------
  112-  156 (34.16/10.08)	...QTSIVN..DVGQS.SETNAIA.....QFSQylvgnNLVE...QnmQ.PNMSPDFQsE
  192-  231 (73.02/29.70)	FAIQPDIHN..RQPHQ.RQKHVTS.....QTSQ.....NLYS...Q..P.PSASPQYQ.Q
  234-  274 (45.87/15.99)	FS.QPSNSTmfQQNQQlRQQHDAS.....EQRQ.......WS...M..PqQNVLPSFQ.Q
  292-  324 (46.72/16.42)	AGPQSIILN..SQLHQ.SSSHMIQ.....Q...............Q..G.VTASEQKV.Q
  328-  361 (29.19/ 7.57)	............QPVQ.SHQILGS.....QKQS.....GLSQegiQ..PrPQTSASFH.Q
  365-  407 (42.26/14.17)	IADQQKLF....QSHR.SFAGSSSasaepKSSN.....QLAN...T..A.DGHDADYQ.K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     304.82|      61|      61|     638|     698|       2
---------------------------------------------------------------------------
  453-  522 (39.34/20.72)	......MP..IFSLQ.R.N.QMANA...SKEKLQMaqqaiikfvnyfrkkSSAS....VE..QQAdLC..LqnsgQS..QI.SQPPLNWNEKLQF.....
  523-  595 (54.86/32.97)	HPVNLTMTngLGSSS.L.T.SSMQSgflNSRPSFF...............SSLQyssgMDleQRN.GPsmV....QQ..PArKTGIIS.SNNIV.NAFDS
  638-  698 (101.14/69.52)	SPENLHLP..LISTT.I.H.QPHSS...SPRKSQL...............SSAR....MD..QQT.FP..L....AS..PA.STPLTSTSEYVAFNQVDS
  705-  760 (58.30/35.68)	QSTASGTP..GISASpL.L.EEYTS...SPNTSDT...............NQ...............P..L....QRllQA.VKSLSPDVLSAAVHDIDS
  777-  832 (51.18/30.06)	SKGAIGED..LVSET.IfHvQERNF...ALQHLSM...............KDKE....ME..HQS.NA..M....AS..DTiGQPMDWISDF........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.94|      35|     822|      19|      55|       3
---------------------------------------------------------------------------
   19-   55 (56.30/49.52)	RQDWRAELTSEVRKkvVEKILGNLK.DHYKMQASSDPE
  844-  879 (54.64/40.98)	RTEPRNDLLNEIRH..VNKLLVETTvDVDSTEDDSLPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.34|      10|      16|      84|      93|       4
---------------------------------------------------------------------------
   84-   93 (18.70/11.01)	TIGKKMGSFG
  102-  111 (18.64/10.95)	TTGKNPSGLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25551 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NLVEQNMQPNMSPDFQSEVPGSQSSDQKLMYQLQQ
2) SPFAHQTTLTQNLEQQMQKQNIQHKKEQMLIRNSQKSGSPAMESPENLHLPLISTTIHQPHSSSPRKSQLSSARMDQQTFPLASPAS
3) TSTSEYVAFNQVDSQTQSHNQSTASGTPGISASPLLEEYTSSPNTSDTNQPLQRLLQ
4) VQNISKRFAIQPDIHNRQPHQRQKHVTSQTSQNLYSQPPSASPQYQQSSFSQPSNSTMFQQNQQLRQQHDASEQRQWSMPQQNVLPSFQQPLGQQRDVSEIQHQQKMAGPQSIILNSQLHQSSSHMIQQQGVTASEQKVQKITQPVQSHQILGSQKQSGLSQEGIQPRPQTSASFHQQRSIADQQKLFQSHRSFAGSSSASAEPKSSNQLANTADGHDA
139
595
685
185
173
681
741
403










Molecular Recognition Features






MoRF SequenceStartStop




NANANA