<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25546

Description Uncharacterized protein
SequenceMAMVGHVPVAKTQQASPLRLVEFRMPGKMASGREVVEETVARVIEVIEEKIFVAVGKSVKECKSMLFWALQKSGGKRICIIHVHQPAQMIPFMGTKFPASKLKEQEVRAYWEIERQEMLKMLGEYLFLCRKMGVRAEKLYVEMESIEKGILELISQHGIRKLVMGAAADKRYSKNMMDIKSKKAVSVCLQAPASCHIWFICKGHLIQTRKGALDGTDTDVRPSSQQKSPNTEAGQSNIMRSQSILFGQHHHVKLTNPAQDLFRKVRSLNVNGPGGRLTTPTSPDGGPSTPSRSDADGSSDQYDALSRSTSQNSVLSSRSSSGMANVALIPLLGIEGSEIGSELSTVPHQKDGSIEDPLYDQLEQAMAEAENSRFEASEEAVRCAKEERDVVEAIRKAKASESLYTEESKRRTVVEEELAKEKEELEKINKELEKINKEQDEVMGELCIAQDHKSLLEKQIEESDEMVKELEQKIISAVGLLQNYKKERDHLHKGRDYALKEAEELRRNQTEASSTHMPRFFSDFSFSEIEEATHHFDPSRKIGEGGYGNIYKGVLRQTQVAVKMLDSNSMQGPAEFQQEVNVLSKMRHPNLITLVGACPEAWTLIYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSSKPHSIVHGDLKPANILLDENFVTKLSDFGICRLLDHKEGSSNNTTICRTDPKGTFVYMDPEFVSTGELSPKSDVYSFGIILLRLLTARQALGITKEVRYALDKGTLKTLLDPLAGDWPFVQAEMLAHMALRCCEMNRKNRPDLASEVWRVLEPMKASCGTSSFSQLGSEEHFQPPSYFTCPIFQEVMRDPHVAADGFTYEAEALKGWLDSGHDTSPMTNFKLAHCDLIPNRALRSAIQGQL
Length890
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.435
Instability index51.58
Isoelectric point6.16
Molecular weight99683.72
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25546
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.50|      14|      44|     658|     671|       2
---------------------------------------------------------------------------
  658-  671 (24.15/13.03)	DLKPANILLDENFV
  699-  712 (27.35/15.56)	DPKGTFVYMDPEFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     293.60|      90|     278|     498|     592|       4
---------------------------------------------------------------------------
  498-  592 (144.81/111.53)	ALKEAEELRRNQTEASS......THMPRFFSDFSFSEIeEATHHFDPSRKIGeggyGNIYKGVLRQTQVAVKML..DSNSMQGPAEFQQEVNVLS..KMRHPNLI
  778-  877 (148.79/99.74)	ALRCCEMNRKNRPDLASevwrvlEPMKASCGTSSFSQL.GSEEHFQPPSYFT....CPIFQEVMRDPHVAADGFtyEAEALKGWLDSGHDTSPMTnfKLAHCDLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.84|      29|      29|     110|     138|       7
---------------------------------------------------------------------------
   88-  108 (25.41/14.10)	.......Q..MIPFMGTK.FPASK..LKEQEVR
  110-  138 (52.19/37.41)	YWEIERQE..MLKMLGEYLFLCRK..MGVRAEK
  140-  170 (33.24/20.91)	YVEMESIEkgILELISQHGI..RKlvMGAAADK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.00|      20|      21|     373|     392|       8
---------------------------------------------------------------------------
  373-  392 (31.83/24.86)	RFEASEEAVRCAKEERDVVE
  396-  415 (30.17/23.10)	KAKASESLYTEESKRRTVVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25546 with Med32 domain of Kingdom Viridiplantae
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