<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25545

Description Uncharacterized protein
SequenceMEGVDGLEAERVFHLEETIFVAVGKNVDKSKRLLFWVLQSFAGKKICLLYVHRPANVVSFTHRKLAVNKLKEDAVKAFQELETKKMHDVLDQYRLILAQEGVEADKVWIKMDDIAKGIVEVIAQYNIRWLVMGAAADKYYSKKLGEIKSKKAIIVCQQAPTSCHIWEGRDYGSETEISLPLLLLSSDSDTEQLRLLRSESLTQLDRSLDAEEVAGDLEGILGRFDYYPVHSCQSTNIILSTSKLIPLLADEEEKTQTQTTEETCSRLEQAIMDTKDSKQKALVEAVKRWKEEDNVMEAKCKAIALENLCIKEISLRKEMEEALNRRKQEVEKKKNQRDEFLKELQMVQEHKFALESQIAESQNTVEELEQKIISAVQLLISFKERRDAAMVEYENARQEVRRLKRSAIAAAAGSKSEILEFSFMEINEATHYFDPSWKISEGKYGSVYKGLLRHLLVAIKMFPSYSSQSLLDFQNGVEIFSRVRHPNLVMLVGTCPESRSLVYEYVRNGSLEDNLFCKDKMPPLPWQTRIRIAVQICSSLVFLHSNKPCIIHGNLKPSKVLLDANFVSKLTDFGVFYLIPQSESGSNLTGICNKSNPNFTSLYIDPEYLETGMLTPESDVYSFGIILLQLLTGRAGLDILKEVKCAIEKDNFKALLDCSGGNWPFEEAEQLANLALRCCEKNRLDRPDLVLILRVLEPMKTSGIDSGPKEPSRIPSHFVCPILQEVMDDPQIAADGFTYEAEAIRGWLKSGHNTSPMTNLKLEHCNLLPNHALHQAILEWRQHL
Length784
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.283
Instability index46.70
Isoelectric point5.78
Molecular weight89097.49
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25545
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.03|      26|      30|      81|     110|       1
---------------------------------------------------------------------------
   83-  108 (44.30/37.95)	TKKMHDVLDQYRLILAQEGVEADKVW
  115-  140 (43.74/26.75)	AKGIVEVIAQYNIRWLVMGAAADKYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.15|      32|      34|     261|     292|       2
---------------------------------------------------------------------------
  261-  292 (53.24/38.20)	EETCSRLEQAIMDTKD.SKQKALVEAVKRWKEE
  297-  329 (47.91/33.61)	EAKCKAIALENLCIKEiSLRKEMEEALNRRKQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.38|      52|     489|      15|      74|       3
---------------------------------------------------------------------------
   15-   74 (72.80/72.01)	LEETIFVAvgknvDKSKRlLFWVLQSFAGKKIC..LLYVHrpANVVSFTHRKLAVNKLKEDA
  511-  564 (90.57/62.60)	LEDNLFCK.....DKMPP.LPWQTRIRIAVQICssLVFLH..SNKPCIIHGNLKPSKVLLDA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25545 with Med32 domain of Kingdom Viridiplantae
Unable to open file!