<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25544

Description Uncharacterized protein
SequenceMGFSLKHRAGSFMVVAIFLLGSLLTVSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAANPERTIFDVKRLIGRVYGDKEVQKDMKLFPYKIVNKDGKPYIEVKIKDGETKVFSPEEISAMVITKMKETAEAFLGKKIKDAVITVPAYFNDAQRQATKDAGVIAGVRVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDVSKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKHQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNSVIPAKKSQTFTTYQDQQTTVTIQVFEGERSLTKDCRSLGKFDLSGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVREAEEFAEDDKKVKEKIDARNSLETYVYNMKNQVNDKDKLADKLEADEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITSVYQRSGGAPGGAADGGDDDDSNDEL
Length668
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.437
Instability index28.63
Isoelectric point5.13
Molecular weight73405.27
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25544
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.69|      13|      21|      72|      85|       1
---------------------------------------------------------------------------
   72-   85 (21.36/19.38)	PSWVAFtDSERLIG
   96-  108 (24.33/16.38)	PERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.91|      26|      27|     552|     577|       2
---------------------------------------------------------------------------
  552-  577 (40.02/23.03)	VREAEEFAEDDKKVKEKI..DARNSLET
  579-  606 (35.15/19.40)	VYNMKNQVNDKDKLADKLeaDEKEKIET
  608-  631 (34.74/19.09)	VKEALEWL.DDNQSAEKE..DYEEKLK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.30|      11|      27|     233|     243|       3
---------------------------------------------------------------------------
  233-  243 (20.46/12.61)	LGGGTFDVSIL
  261-  271 (21.85/13.98)	LGGEDFDQRIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.14|      34|     197|     162|     232|       4
---------------------------------------------------------------------------
  183-  232 (37.75/73.49)	YFNDaqRQATKdaGViagvrvariiNePTaAAIAYG.......LDKKGGE..KNILVFD
  386-  428 (53.39/19.11)	YFDG..KEPNK..GV..........N.PD.EAVAYGaavqggiLSGEGGDetKDILLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.84|      24|     195|     283|     324|       5
---------------------------------------------------------------------------
  298-  324 (30.78/20.22)	RECERAKRAlSSQHQVRVEIESlfDGV
  495-  518 (41.06/30.15)	SGIAPAPRG.TPQIEVTFEVDA..NGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      13|     195|     283|     296|       6
---------------------------------------------------------------------------
  284-  296 (22.10/17.47)	KDVSKDNRALGKL
  480-  492 (24.03/12.64)	RSLTKDCRSLGKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25544 with Med37 domain of Kingdom Viridiplantae
Unable to open file!