<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25543

Description Uncharacterized protein
SequenceMESPAWLPQREVKPPPTATESGVAAATPPPENSAGNNAHSSYSSPAPTFTYNVTPNMSSGAALNSNPPGQPVPVPGPASSVGLSFSYKIPQTGPGFPGNQQLQSSVDKSPAIAQGSAPSVAPIASQSASFPLHSPSSSYTSLSSNLGPTPSQTPATASFYLPPGLPRTPGTLAPQGLVPSAPMTQPSVAADSLPLGVQRPIMPTMPSSNAVQQQTYPTYPSLPVMAASPQALWMHPPPIGGMPRQPFLSYPAAFPGSFPPPGHGMPYPSVSLPDSQPPGVVPVGHSYAIPMSSSASVHQLPGAPGMQTELPPPGIDNHNHLHHSGIRDNAAVSEPSHAWTAHKTDTGVFYYYNAVTGVSTYEKPPGFKEPEKVPVQPTPVSMENLAGTDWVLITTNDSKKYYYNNKTKLSSWQIPSEVTELRKNQEAEVSKGNAMSVSQVNALTEKGSAPISLSAPAANTGGRDATALRVLSVPGTSSALDLIKKKLQEFGAPAISAAVSVSSGAAASESNGSRVVEAAAKGLPSEISKDKLKDANGDGNISDSSTDSEDEDDGPSKEECIIQFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSARRSLFEHYVKTRAEEKRKEKRAAQKAAVEGFKQLLEEASEDIDHNTDYQTFRKKWGNDPRFEALDRKDREHLLNERIHLLKKAAQEKAQAERAYAAASFKSMLRDKGDITVSSRWSRVKDSLRNDPRYKSVKHEDREVFFNEYLYELKAAEEAERDARGKTEEQLLSSSVQDKLKERERELRKRKEREEQEMERVRVKVRRKEAVASFQALLVETLKDPQASWTESKPKLDKDPQRRATHPDLDPSDTEKLFREHMKMLHERCTNDFKALLAEVITAETAAQKTDDGKTVLDSWSTAKRLIKPDPRYNKMPRKERETLWRRYAEEMLRKQKFEPDPKEDKHTDSKNRSANDSGRYHSGSRRTNDRR
Length966
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.789
Instability index56.94
Isoelectric point8.83
Molecular weight106105.53
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25543
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     438.59|      66|      66|     627|     692|       1
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  564-  621 (63.05/36.17)	....FKEMLKE...........RGVA....PF.SKWE.......KelpklvfDPRFKA....IPSHSARRSLFE...HYVKTRAEEKRKEKR
  627-  692 (107.94/67.73)	AVEGFKQLLEE...ASEDIDHNTDYQ....TFRKKWG.......N.......DPRFEA....LDRKDREHLLNERI.HLLKKAAQEKAQAER
  695-  750 (75.10/44.65)	AAASFKSMLRD....KGDITVSSRWS....RVKDSLR.......N.......DPRYKS....VKHEDREVFFNEYL.YELKAA.........
  751-  801 (48.70/26.09)	.........EE...AERDARGKTEEQllssSVQDKLK.......E.......RER.EL....RKRKEREEQEMERV..........RVKVRR
  804-  861 (64.44/37.15)	AVASFQALLVE...TLK..DPQASWT....ESKPKLD.......K.......DPQRRAthpdLDPSDTEKLFREHM.KMLHE..........
  863-  938 (79.37/47.65)	CTNDFKALLAEvitAETAAQKTDDGK....TVLDSWStakrlikP.......DPRYNK....MPRKERETLWRRYAeEMLRKQKFEPDPKE.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     480.01|      76|      76|     162|     237|       2
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    4-   74 (85.88/38.17)	PAWL.PQREVkP........PPTA..TES...GVAAAT.....PPPENSAGNNAHSSYsspaPTftYNVTPNMS.SGAALNSNPP..............................GQPvPV
   75-  168 (82.66/36.43)	PGPASSVGLS.FSykIPQTGP..G.....FP.GNQQ.L.....QSSVDKSPAIAQ.......GS..APSVAPIASQSASFPLHSPsssytslssnlgptpsqtpatasfylPP..GLP.RT
  169-  245 (140.09/67.47)	PGTLAPQGLV.PS..APMTQPSVA..ADSLPLGVQRPI.....MPTMPSSNAVQQQTY....PT..YPSLPVMAASPQALWMHP...........................PPigGMP.RQ
  255-  317 (77.06/33.40)	PGSFPP.....PG..HGMPYPSVS.lPDSQPPGV.VPVghsyaIP.MSSSASVHQ..............LP...GA.......PG....................mqtelpPP..GID..N
  318-  385 (94.31/42.72)	HNHLHHSGIR.DN..AAVSEPSHAwtAHKTDTGV............FYYYNAVT..GV....ST..YEKPPGF.KEPEKVPVQPT..........................PV..SME.NL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.27|      16|      16|     522|     537|       3
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  522-  537 (26.84/15.25)	GLPSEISKDKLKDANG
  539-  554 (27.43/15.75)	GNISDSSTDSEDEDDG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.86|      33|      61|     407|     445|       4
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  407-  439 (56.66/36.38)	TKLSSWQIPSEVTEL....RKNQE.........AEVSKGNAMSVSQ
  466-  511 (39.20/14.72)	TALRVLSVPGTSSALdlikKKLQEfgapaisaaVSVSSGAAASESN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25543 with Med35 domain of Kingdom Viridiplantae
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