<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25543

Description Uncharacterized protein
SequenceMESPAWLPQREVKPPPTATESGVAAATPPPENSAGNNAHSSYSSPAPTFTYNVTPNMSSGAALNSNPPGQPVPVPGPASSVGLSFSYKIPQTGPGFPGNQQLQSSVDKSPAIAQGSAPSVAPIASQSASFPLHSPSSSYTSLSSNLGPTPSQTPATASFYLPPGLPRTPGTLAPQGLVPSAPMTQPSVAADSLPLGVQRPIMPTMPSSNAVQQQTYPTYPSLPVMAASPQALWMHPPPIGGMPRQPFLSYPAAFPGSFPPPGHGMPYPSVSLPDSQPPGVVPVGHSYAIPMSSSASVHQLPGAPGMQTELPPPGIDNHNHLHHSGIRDNAAVSEPSHAWTAHKTDTGVFYYYNAVTGVSTYEKPPGFKEPEKVPVQPTPVSMENLAGTDWVLITTNDSKKYYYNNKTKLSSWQIPSEVTELRKNQEAEVSKGNAMSVSQVNALTEKGSAPISLSAPAANTGGRDATALRVLSVPGTSSALDLIKKKLQEFGAPAISAAVSVSSGAAASESNGSRVVEAAAKGLPSEISKDKLKDANGDGNISDSSTDSEDEDDGPSKEECIIQFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSARRSLFEHYVKTRAEEKRKEKRAAQKAAVEGFKQLLEEASEDIDHNTDYQTFRKKWGNDPRFEALDRKDREHLLNERIHLLKKAAQEKAQAERAYAAASFKSMLRDKGDITVSSRWSRVKDSLRNDPRYKSVKHEDREVFFNEYLYELKAAEEAERDARGKTEEQLLSSSVQDKLKERERELRKRKEREEQEMERVRVKVRRKEAVASFQALLVETLKDPQASWTESKPKLDKDPQRRATHPDLDPSDTEKLFREHMKMLHERCTNDFKALLAEVITAETAAQKTDDGKTVLDSWSTAKRLIKPDPRYNKMPRKERETLWRRYAEEMLRKQKFEPDPKEDKHTDSKNRSANDSGRYHSGSRRTNDRR
Length966
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.789
Instability index56.94
Isoelectric point8.83
Molecular weight106105.53
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25543
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     438.59|      66|      66|     627|     692|       1
---------------------------------------------------------------------------
  564-  621 (63.05/36.17)	....FKEMLKE...........RGVA....PF.SKWE.......KelpklvfDPRFKA....IPSHSARRSLFE...HYVKTRAEEKRKEKR
  627-  692 (107.94/67.73)	AVEGFKQLLEE...ASEDIDHNTDYQ....TFRKKWG.......N.......DPRFEA....LDRKDREHLLNERI.HLLKKAAQEKAQAER
  695-  750 (75.10/44.65)	AAASFKSMLRD....KGDITVSSRWS....RVKDSLR.......N.......DPRYKS....VKHEDREVFFNEYL.YELKAA.........
  751-  801 (48.70/26.09)	.........EE...AERDARGKTEEQllssSVQDKLK.......E.......RER.EL....RKRKEREEQEMERV..........RVKVRR
  804-  861 (64.44/37.15)	AVASFQALLVE...TLK..DPQASWT....ESKPKLD.......K.......DPQRRAthpdLDPSDTEKLFREHM.KMLHE..........
  863-  938 (79.37/47.65)	CTNDFKALLAEvitAETAAQKTDDGK....TVLDSWStakrlikP.......DPRYNK....MPRKERETLWRRYAeEMLRKQKFEPDPKE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     480.01|      76|      76|     162|     237|       2
---------------------------------------------------------------------------
    4-   74 (85.88/38.17)	PAWL.PQREVkP........PPTA..TES...GVAAAT.....PPPENSAGNNAHSSYsspaPTftYNVTPNMS.SGAALNSNPP..............................GQPvPV
   75-  168 (82.66/36.43)	PGPASSVGLS.FSykIPQTGP..G.....FP.GNQQ.L.....QSSVDKSPAIAQ.......GS..APSVAPIASQSASFPLHSPsssytslssnlgptpsqtpatasfylPP..GLP.RT
  169-  245 (140.09/67.47)	PGTLAPQGLV.PS..APMTQPSVA..ADSLPLGVQRPI.....MPTMPSSNAVQQQTY....PT..YPSLPVMAASPQALWMHP...........................PPigGMP.RQ
  255-  317 (77.06/33.40)	PGSFPP.....PG..HGMPYPSVS.lPDSQPPGV.VPVghsyaIP.MSSSASVHQ..............LP...GA.......PG....................mqtelpPP..GID..N
  318-  385 (94.31/42.72)	HNHLHHSGIR.DN..AAVSEPSHAwtAHKTDTGV............FYYYNAVT..GV....ST..YEKPPGF.KEPEKVPVQPT..........................PV..SME.NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.27|      16|      16|     522|     537|       3
---------------------------------------------------------------------------
  522-  537 (26.84/15.25)	GLPSEISKDKLKDANG
  539-  554 (27.43/15.75)	GNISDSSTDSEDEDDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.86|      33|      61|     407|     445|       4
---------------------------------------------------------------------------
  407-  439 (56.66/36.38)	TKLSSWQIPSEVTEL....RKNQE.........AEVSKGNAMSVSQ
  466-  511 (39.20/14.72)	TALRVLSVPGTSSALdlikKKLQEfgapaisaaVSVSSGAAASESN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25543 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEEMLRKQKFEPDPKEDKHTDSKNRSANDSGRYHSGSRRTNDRR
2) AERDARGKTEEQLLSSSVQDKLKERERELRKRKEREEQEMERVR
3) EISKDKLKDANGDGNISDSSTDSEDEDDGPSKEECI
4) MESPAWLPQREVKPPPTATESGVAAATPPPENSAGNNAHSSYSSPAPTFTYNVTPNMSSGAALNSNPPGQPVPVPGPASSVGLSFSYKIPQTGPGFPGNQQLQSSVDKSPAIAQGSAPSV
5) SPSSSYTSLSSNLGPTPSQTPATASFYLPPGLP
6) SVHQLPGAPGMQTELPPPGIDNHNHLHHSGIRDNAAVSEPSHA
7) SWTESKPKLDKDPQRRATHPDLDPSDTEKLFREHMKM
8) TPGTLAPQGLVPSAPMTQPSVAADSLPLGVQRPIMPTMPSSNAVQQQTYPTYPS
9) VITAETAAQKTDDGKTVLDSWSTAKRLIKPDPRYNKMPRKERETLWRR
923
753
526
1
134
296
822
168
874
966
796
561
120
166
338
858
221
921










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRLIKP
2) LWRRYAEEMLRKQKFE
3) MESPAWLPQREVKP
897
918
1
903
933
14