<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25542

Description Uncharacterized protein
SequenceMAAMEGVMQDQSQLQNQQQQQMVVPERLNHAVQQQLNLESVKTRAISLFKALTRILEDFDAYARTNTTPKWQDILGQYSMVNLELFSIVDEIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEMDDNSKREHLLQGMQSLPISSQIEKLKARIDMIAAACEGAEKVLADTRKAYQFGTRQGPTTLPTLDKAQAAKILEQENLLRAAVNGGEGLRVTGDQRQMTSALPVHLVDVLAVSDGMHSFSDSSGMYMKNTPPISNSINNQGSLLQQPTGTPLHGRSAASPSAATSATSFDHTTPSPLPYANSPRSGTNMMNTPSPQQQVQQQQQQQQQQQQRQKILLAQQQLRQSSLQALGQNQMSQMHDLQSQGQQKFQPLHGQHQMQYSQPVGHQQFQSRQLSSGHVQHGMGQSQLNQGNQLNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSSTMSSQPPVTRMQFGLAGNNPQRSLASTVLNDQMYNMGVSNPGGMMPMQQQQQQLGSQGAFGNMQPNAQNLQSSMAALQNASQNHPNFAQQRQQNQQ
Length551
PositionHead
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.685
Instability index60.13
Isoelectric point9.19
Molecular weight60712.49
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25542
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     519.61|     167|     316|       7|     196|       1
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    7-  190 (248.36/120.56)	VM.....QDQSQLQNQQQQQMVVPERLNHAvQQQLNLESVKtrAisLFKALTRILEDFDAyartNTTPKWQDILGQYSM.....VNLELFsivdEIKKVSKAFVVH...PKNVNAEN..ATILPVMLSSKLLPEMEMDDNSKREHLLQGMQSlPISSQIEKLKARIDMiaaACEGAEKVLADT...RKAYQFGTRQGPTTLP
  317-  501 (271.25/98.08)	MMntpspQQQVQQQQQQQQQQQQRQKILLA.QQQLRQSSLQ..A..LGQNQMSQMHDLQS....QGQQKFQPLHGQHQMqysqpVGHQQF....QSRQLSSGHVQHgmgQSQLNQGNqlNRHLSQFSSAANTSLFNTGQGAPNTQMIPNMSS.TMSSQPPVTRMQFGL...AGNNPQRSLASTvlnDQMYNMGVSNPGGMMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.47|      17|      18|     507|     524|       2
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  512-  531 (21.06/10.20)	QGAFGNmQPN.AQNlqSSMAA
  533-  550 (27.41/10.00)	QNASQN.HPNfAQQ..RQQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.32|      19|      22|     272|     292|       4
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  272-  292 (29.20/20.68)	LQQPTGTPLHgrSAASPSAAT
  297-  315 (37.11/19.96)	FDHTTPSPLP..YANSPRSGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25542 with Med8 domain of Kingdom Viridiplantae
Unable to open file!