<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25532

Description Uncharacterized protein
SequenceMTVVAVAVTGSEGVGGRGSRRAVRWAAENLSAKAKRLTLVHIVPRITCIPSPCGGDGIVIEELDENVVALYLDEMKMKLEDDIFLPFKKLCKSRVEKVETVVIEDDNPATGLLRYVRESGIDSLVLGSCSSNCFLRKLKGPGVPTTVLKCAPETCNVHVVSRRKIISISATSSASIDSKVEGTFESSSVTNLSHLDPHMGLSMTLDVGSCNSLASRESDQAEVEQLQLELQNTIMMYKRACEELVHTQNKVQLLSLECLEEENKVNAALEREETLKRIAAEEKARYLQAIEEVEEAKDLLAKEANGRQIAERNALNESLEKQKIVDAVFSNDRRYKRYTKDEIELATGFFSDSNVIGEGSYGKVYKCNLDHTPVAVKVFCPDAVNKKQEFLREVEVLTQLHHPHLVLLVGACPDNGCLAYEYLENGSLEESIFCRNGKQSLPWFVRFRIVFEVACGLAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDVVPDNMTEYRDSILAGTLNYMDPEYQRTGTVRPKSDLYAFGVTVLQVLTARPPGGLILTVENAIMNGSFTDILDKSVKDWPLAETEELAKIALKCSSLRCRDRPDLDAEVLPVLRRLVDVAAASVEVERGNIYAPSHYFCPILQDLMDDPYIAADGFTYEHRAIKAWLDRHNISPVTKLRFQHSILTPNHTLRSAIQEWRSRVIMQVP
Length707
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.189
Instability index47.41
Isoelectric point5.67
Molecular weight78845.46
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25532
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.08|      28|      29|     256|     284|       1
---------------------------------------------------------------------------
  256-  274 (23.00/12.99)	...........LECLEEENKVNAALEREET
  276-  296 (23.50/15.22)	KRIAAEEKAryLQAIEEV.........EEA
  297-  323 (36.58/21.85)	KDLLAKEAN..GRQIAERNALNESLEKQK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.45|      34|      35|     438|     472|       2
---------------------------------------------------------------------------
  438-  472 (58.12/44.03)	KQSLPWFVRfRIVFEVA.CGLA.FLHNSKPDPIV.HRD
  474-  510 (45.32/28.66)	KPGNILLDR.NYVSKIGdVGLAkLISDVVPDNMTeYRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.38|      46|      53|     328|     380|       3
---------------------------------------------------------------------------
  328-  380 (67.90/54.88)	VFSNDRRYKRYtkdeIELATGFFSDSNVI......GEGSYGKVYkcnLDHTPVAVKVFC
  383-  434 (71.48/41.06)	AVNKKQEFLRE....VEVLTQLHHPHLVLlvgacpDNGCLAYEY...LENGSLEESIFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.30|      21|      54|     121|     141|       4
---------------------------------------------------------------------------
  112-  133 (31.10/19.32)	LLRYVRESgIDSLVLGSCSSNC
  134-  155 (33.20/21.13)	FLRKLKGPgVPTTVLKCAPETC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25532 with Med32 domain of Kingdom Viridiplantae
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