<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25531

Description Uncharacterized protein
SequenceMKSVSLDYWRNYFRTASSDIFGIIDHAILVAASDCPKEFKFRRDRIAERLFSCRLIKCSGCNRVELAVPGHDEGVSDDGGCCSKRRDGDNSGGVGGGDDDDDDDDVDIDIDDGGFEYEGGGSKGSKVNSSNRDNDIDNGEVNVNDQLVYNFSYGDAEALTDEIEEVSQTVDEVLRIKDILYNSQDESDSVLLESLRKLRLMALTVDTLKATEIGKAVNVLRKHGSKQIRYLARTLIEDWKVLVDEWYSTANAIRGDEGTPDSVNPSVVDEEEGLPSPPLDEGAFFATQPTSMELSQFFDGMDDDGNPRNGGEFIKNRESGQRPSVEKQNFAKQKQHTPNGANVLSKDNKSQQMRRQEAIVKASKPSNANSGPGRPLMQNVEQKMNQEPQLIRKTDKITSQRKPPTGQQDKLKNSDEVDVQMKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGYVQKNQPIRPGNQNRHWAHGRRQTF
Length483
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.940
Instability index36.75
Isoelectric point5.17
Molecular weight54219.30
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25531
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.72|      22|      29|     260|     288|       1
---------------------------------------------------------------------------
  260-  284 (36.57/38.71)	PDSVNPS.VVD..EEEGlpsPPLDEGAF
  289-  313 (33.16/15.36)	PTSMELSqFFDgmDDDG...NPRNGGEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.09|      23|      31|      72|     102|       2
---------------------------------------------------------------------------
   77-  102 (41.15/32.09)	DDGGCcskRRDGDNSGG..VGGGDDDDD
  111-  135 (38.94/13.81)	DDGGF...EYEGGGSKGskVNSSNRDND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.95|      26|      28|     348|     375|       3
---------------------------------------------------------------------------
  348-  375 (39.76/25.29)	NKSQQMRRQEAIVKasKPSNANSGPGRP
  379-  404 (44.18/23.00)	NVEQKMNQEPQLIR..KTDKITSQRKPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.60|      16|      27|     407|     433|       4
---------------------------------------------------------------------------
  407-  423 (21.61/29.90)	QQDKLKNSDEVDVqMKL
  436-  451 (25.99/ 8.19)	QAENAKRQRTIQV.MEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25531 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IRGDEGTPDSVNPSVVDEEEGLPSPPLDEGAFFA
2) LSQFFDGMDDDGNPRNGGEFIKNRESGQRPSVEKQNFAKQKQHTPNGANVLSKDNKSQQMRRQEAIVKASKPSNANSGPGRPLMQNVEQKMNQEPQLIRKTDKITSQRKPPTGQQDKLKNSDEVDVQMKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGYVQKNQPIRPGNQNRHWAHGRRQTF
253
294
286
483










Molecular Recognition Features






MoRF SequenceStartStop




NANANA