<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25527

Description Uncharacterized protein
SequenceMAGTWRARGAVVSAILLFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLHDGMDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTSIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDRGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKDALEWLDDNQNAEKEDYEEKLKEVEAVCNPIITAVYQRSAGAPGGGSAEDSEDDSQDEL
Length666
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.457
Instability index29.28
Isoelectric point5.10
Molecular weight73465.39
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25527
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      15|      21|      68|      83|       1
---------------------------------------------------------------------------
   68-   83 (24.15/24.34)	ITPSWVAFtDSERLIG
   92-  106 (27.25/21.16)	VNPERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     412.29|     140|     197|     160|     316|       3
---------------------------------------------------------------------------
  160-  316 (198.03/176.28)	KETAEAFLGKKIKDAVVTVPA.............YFNDaqRQATKdaGVIAGLNVAriinepTAAAIAYG.LDKKGGE..KNILVFDLGGGTFDVSvlTIDNGVFEVLSTNG.....DTHLGGEDFDQRiMEYFIKLIKKKhgKDISKDNRALGKLrrECERAKRALSSQHQVRVEIE
  350-  510 (214.26/141.47)	KAMDDAGLEKNQIDEIVLVGGstripkvqqllkdYFDG..KEPNK..GVNPDEAVA......FGAAVQGGiLSGEGGDetKDILLLDVAPLTLGIE..TVGGVMTKLIPRNTviptkKSQVFTTYQDQQ.TTVSIQVFEGE..RSLTKDCRLLGKF..DLTSIPPAPRGTPQIEVTFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.43|      15|     472|      51|      65|       4
---------------------------------------------------------------------------
   51-   65 (26.67/16.18)	VYKNGHVEI.IANDQG
  511-  525 (22.84/12.87)	VDANGILNV.KAEDKG
  526-  539 (15.92/ 6.91)	TGKSEKI..tITNDRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.31|      26|      26|     550|     575|       5
---------------------------------------------------------------------------
  550-  575 (39.16/26.73)	VREAEEFAEEDKKVKERI..DARNSLET
  577-  604 (36.15/24.06)	VYNMKNQINDKDKLADKLesDEKEKIET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25527 with Med37 domain of Kingdom Viridiplantae
Unable to open file!