<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25521

Description Uncharacterized protein
SequenceMDIDDFRSILESSGVDVWNFIDTAIDVASLDFGSELKRRRDDIVARLFAASSSCSRCRDRSFDDIDINNTANGNGMKDLAEKESSHEEEKGRRVYADSPVTPRSVNGDGDDEELDPFGGLFDDEPKKILDIKQQLEDLDQPEDSLVDLLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVKRLVKQLVRKWKEIVDDWVRLNPHGERASSGLMAYGDSPQQKIPQNGRHQVPDFAYSPNPHNGSSGSDRNNSEPERKPKLAPPRNEALTKPIKKSVPASSSAPHNVQRQREQPKENKFDADQKFASASKRLQANYKEAENAKKQRTIQVMDIHEIPKPKNKNTFFAKNRGGGSHQGRHW
Length361
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.047
Instability index53.11
Isoelectric point6.39
Molecular weight40829.76
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25521
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.29|      19|      34|     204|     224|       1
---------------------------------------------------------------------------
  204-  224 (31.90/26.88)	NPHGerASSGLMAYGDSPQQK
  241-  259 (36.38/23.61)	NPHN..GSSGSDRNNSEPERK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.36|      17|      32|     276|     292|       2
---------------------------------------------------------------------------
  276-  292 (28.89/17.46)	KSVPASSSAPHNVQRQR
  311-  327 (27.48/16.30)	KRLQANYKEAENAKKQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.15|      24|      32|      51|      75|       3
---------------------------------------------------------------------------
   51-   75 (39.52/28.56)	SSSCSRCRdRSFDDIDIN.NTANGNG
   85-  109 (37.64/22.19)	SHEEEKGR.RVYADSPVTpRSVNGDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.73|      23|      36|     130|     152|       4
---------------------------------------------------------------------------
  130-  152 (36.62/24.12)	DIKQQLEDL.DQPEDSLVDLLQSL
  166-  189 (34.11/21.97)	DIGRHVNRLrKHPSNDVKRLVKQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25521 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANGNGMKDLAEKESSHEEEKGRRVYADSPVTPRSVNGDG
2) GERASSGLMAYGDSPQQKIPQNGRHQVPDFAYSPNPHNGSSGSDRNNSEPERKPKLAPPRNEALTKPIKKSVPASSSAPHNVQRQREQPKENKFDADQKFASASKRLQANYKEAENAKKQRTIQVMDIHEIPKPKNKNTFFAKNRGGGSHQGRHW
71
207
109
361










Molecular Recognition Features






MoRF SequenceStartStop




1) LDPFGGLFDDEPKKILDIKQQLE
2) NKNTFFAKNRGGGSHQGRHW
3) TKPIK
114
342
271
136
361
275