<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25462

Description Uncharacterized protein
SequenceMVSILQLQTRTEASPASSASAAATRIFAVRRQQQEQEGEEEEEEFEFQERMDLSGAQGELPIPMHASTAASPFAGMGAHGGAGGGHVVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQEGSPVAGKKRGGMAVVGGGGGVAVKYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALNITRTAAALVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMPLNMIHTSESDEMDVSGGGGGGGRGGGSSSSSKKRFRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKVWMHNNKHNLAKKPLPSSPPPPPQIPPMSMPPSPPPMPMPMPPSPPQLKLE
Length357
PositionHead
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.04
Grand average of hydropathy-0.505
Instability index77.97
Isoelectric point6.82
Molecular weight37572.19
Publications
PubMed=15685292

Function

Annotated function Putative transcription factor. 
ECO:0000256	ARBA:ARBA00004049
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25462
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     151.18|      27|      51|     119|     145|       1
---------------------------------------------------------------------------
   36-   64 (32.58/11.24)	QEGeeeeEEFE.FQER..MDLSGAQGELPIPM
   68-   92 (39.29/14.78)	TAA....SPFA.GMGAHGGA..GGGHVVELHR
  119-  145 (46.69/18.70)	QEG....SPVA.GKKRGGMAVVGGGGGVAVKY
  172-  199 (32.62/11.26)	EEG....SLEAlNITRTAAALVAGGDPYGAAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.22|      15|     115|     201|     228|       2
---------------------------------------------------------------------------
  201-  225 (27.93/21.15)	AARALPPPPPPPPhghhhhhqiiMP
  332-  346 (38.29/ 8.38)	PPMSMPPSPPPMP..........MP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.01|      13|      16|     268|     282|       4
---------------------------------------------------------------------------
  268-  280 (22.48/22.12)	QK...ARMLEFAERVG
  284-  299 (20.53/ 9.14)	QKlddAMVHHFCQEIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25462 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVWMHNNKHNLAKKPLPSSPPPPPQIPPMSMPPSPPPMPMPMPPSPPQLKLE
2) SILQLQTRTEASPASSASAAATRIFAVRRQQQEQEGEEEEEEFEFQERMDLSGAQGELPIPMHASTAASPFAGMGAHGGAGGGHVVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQEGSPVAGKKRGGMA
3) YAAARALPPPPPPPPHGHHHHHQIIMPLNMIHTSESDEMDVSGGGGGGGRGGGSSSSSKKRFRTKFTAEQK
306
3
199
357
133
269










Molecular Recognition Features






MoRF SequenceStartStop




1) NNKHNLAKKPL
311
321