<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25455

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSSPLPPLSPQPVVPTGVERMLVRAGGGTRSLREIDEEEDDDDDDGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVEASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSRHQSKGTSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNRSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNYPDNKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTHHELIPNNALRFAIQEWQMKQQL
Length823
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.557
Instability index47.15
Isoelectric point6.15
Molecular weight92366.77
Publications
PubMed=15685292

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25455
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.08|      22|      28|     239|     264|       1
---------------------------------------------------------------------------
  216-  232 (27.96/ 8.34)	PPR..SVS.LP...SWYSGFLGS......
  239-  263 (36.90/22.11)	PRRSNSIS.HP...FPFSRQLENGVeniS
  266-  289 (23.21/11.17)	..RPNSVDvAPkgcSPNSRHQSKGT...S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     141.80|      29|      30|     325|     353|       2
---------------------------------------------------------------------------
  324-  352 (49.33/27.71)	NEMFEQWQQVR...N.ELERSRKEASEGRQKAE
  353-  383 (38.70/20.35)	KELFEASKMFRareN.SLCK.EKIAVEERLTRE
  384-  402 (21.78/ 8.63)	K..............vSLEKEHLQIYNELQKAN
  417-  441 (32.00/15.71)	.SLMEELQTVQ...G.ELQRQKDNAV...KEAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.01|      27|      30|     468|     496|       3
---------------------------------------------------------------------------
  468-  496 (44.00/37.22)	IkeATNDFDESKMIGHGGCGSVYK..GFLRH
  499-  527 (41.01/27.74)	V..AIKKFNREGITGEKEFDDEVEilGRMRH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25455 with Med32 domain of Kingdom Viridiplantae
Unable to open file!