<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25454

Description Uncharacterized protein
SequenceMAPPVIHTKAHLSSYGPWGPYKIRPQYPNPISPSSLSNPFHETNKKKKWRNSGKEGREGEVVGAGEIDFAGGRGAREAVIRGVGRVAPGAAAAGAAVGGMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGAGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQIMQGKMAPQGPGSMPGAGSMPGGGYLS
Length959
PositionUnknown
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.04
Grand average of hydropathy-0.499
Instability index54.51
Isoelectric point9.24
Molecular weight102670.77
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25454
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     309.49|      38|      38|     848|     885|       1
---------------------------------------------------------------------------
  610-  641 (49.06/10.37)	QQQQQQQQQQQQQQQP..........PPKYVkiweGTLSGQR
  759-  786 (39.66/ 6.99)	QNQLQQQNQLHQQHQLQ..PQNQLQQQHQL............
  787-  821 (56.20/12.93)	.QQQLQQQQLQQHMQLQTQGLPLQQQQSQ......GHPLQQQ
  848-  883 (76.49/20.22)	QQQQQQPQQLQQQQQPQMVGTGMGQQQPQMV....GTGMG..
  896-  921 (49.64/10.58)	............QQQPQMVGAGMGQQQPQMV....GAGMGQQ
  924-  950 (38.45/ 6.56)	QGHGRTVQQI...MQGKMAPQGPG....SMP....GAG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     386.30|      85|      87|     431|     517|       2
---------------------------------------------------------------------------
  220-  302 (61.36/25.26)	............................SQ..N......HQSHEVQKHcilvaasnpyplpTPVYRPL....VQS.SDHKE.......N.NdgakescLADAETVAK..SFAQCSV..SLSvVSPKQLPTLKAIYN
  303-  388 (100.10/46.03)	AA..KRNPRA.....ADPS........vDHAKNphflvlLSDNFLEAR.............TALSRPL....PGN.LVTNHP..ITKMD.T.......AATSVPVPT..SNGNPSVngPML..TRQPNG...VVAN
  403-  503 (127.22/64.90)	PAFSHVTPVAngvsqGLSSvqspspsliSQETN......LANDSVQEH.............KPLINPI....QQS.IRPGGPANVSILN.N.......LSQHRSVATiiSGGMPGI..PMS.GTGQSIGSQQVVQN
  504-  552 (69.64/29.70)	TAFGSNTPIT.....GNSN......iavSS.............S....................LGGI....QSN.I..................................GISGP..PVT.QGG.SMGSTQLGQG
  553-  605 (27.99/ 6.93)	...GINT.........NQN.......miS...S......LGTTTVSSA..............PAMMPTpgmaQQAgVNSLGVTNSSAMNmP.......IVQH..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.63|      11|      87|     746|     758|       3
---------------------------------------------------------------------------
  746-  758 (19.19/ 8.70)	QQppMQQQQLQQQ
  824-  834 (24.45/ 6.40)	QQ..MQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      15|      19|      96|     112|       4
---------------------------------------------------------------------------
   97-  111 (23.86/12.97)	VGGMAAAAAERQLVV
  113-  127 (27.77/17.07)	VEGTAALGPYWPVTV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25454 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGAGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQIMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLG
6) TNSSAMNMPIVQHPNAQQQQQQQQQQQQQQQQPPPKYVKIWEG
476
342
410
843
529
593
515
408
467
959
591
635










Molecular Recognition Features






MoRF SequenceStartStop




1) KKKKWR
2) PKYVKIWE
3) PVIHTKAHLSSYGPWGPYKIRPQYPNPI
45
627
4
50
634
31