<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25446

Description Uncharacterized protein
SequenceMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTDQYEKMKSFKLMLERTMHVLQLNKGNIQPALRDKIPAYERQIINILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLNKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1217
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.03
Grand average of hydropathy-0.801
Instability index73.97
Isoelectric point9.27
Molecular weight133738.97
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25446
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     577.91|     113|     133|      81|     213|       6
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   62-  191 (172.84/40.56)	LGQ..NLP..GVNQTSTLQ.............NMS.......gM.PQ.............NTMNNGLAQGA.SQDIY.A.TQ......................RQMAGRQQ................QQQQSQ......NQLIYQQ..........................QQIMMKQKL.......................QQNS..L..MQQ.Q......................SLLQPTQMQSSQqpmmqipsslqpgqsipqtqPMVQSSSQGGIQQNALN..................S
  192-  324 (129.37/28.10)	VPQ..SVQ..SLLQQPTQS.............AMRQQQHsqssMhPQ.............PSLQQ..AQPT.QQPNI.P.LQ......................HQLMGQQQ................NLQ..Q......NQLIGQQ...................ngavdmpQQ....QRL.....................pvQSNN..LlnMQQtQqmlnqqsmpshqqqqlgsqaniSTLQQQQQQ............................NQQ...QQQLLG..................T
  325-  425 (84.15/15.13)	VPNvpNIQrmHMLQTKAVQ.............QPQQQQH....A.QQ.............SSL..GL...............mqpqsqhnqlqqsqqhlmsqfqA.......................QPNQLQ......QQLGMPQ..........................QP.PMQQRL.......................QTSAgmL..LQQ.N......................NIDQQKQFMQAQ........................................................
  486-  609 (106.42/21.52)	VDN..MVP....PQKPTDQyekmksfklmlerTM....H....V.LQ.............L..NKGNIQPA.LRDKI.PaYE......................RQII....................NILNSQ......KRPRVQG..........................QQTQFQQSAgqgptsnipqqqqpsqglqqhdnHTNQ.....MPQ.A......................S......MPSMS....................TGLQSSGAAGI.........................
  610-  805 (85.13/15.41)	.......Q..HLPASPATN...........fgVPATQQN.vtnA.PQatsnlevtqgsnfNSLQHGSMSGAlQQGSTgP.MQ......................GTLNAQQQasssmlshnsvgtmqaNANSMQananslQQLKQQQqehhmmqnqqmkrqmfqqfqqkqmlqQQLPAQQQL.......................QK........QQ.Q......................SQMQVPQHHSGN.........danelkvrqgaAM.....KPGIYQQHLAqrnnfynqqikqgsafpiS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.30|      41|      53|     844|     884|       7
---------------------------------------------------------------------------
  814-  842 (47.77/18.77)	.SPQISH...HSP............QVD................QH....NLLPSQVKTGTPLQS
  844-  884 (75.38/33.71)	NSPYMPS...PSPPVAPSPI.....PVD................SEKPLSNLSSSLTNTGQATHQ
  888-  946 (31.14/ 9.76)	MAPQSQSiavNTPGISASPLlaeftSVDgnqanmptqvlnkssaAERPLDRLLKALRTT......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.15|      31|     588|     430|     465|       8
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  430-  462 (51.40/38.26)	EVSSSTSV.DSTAQTghTGTGTGDWQEEAYQMVK
 1020- 1051 (48.75/22.75)	NVSSAGSVnDSLKQT..FSIGTPELQSTATSRVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.26|      15|      28|     974|     988|      11
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  974-  988 (25.17/18.09)	GNGSRAAVGEDLVAM
 1003- 1017 (26.09/19.04)	GTGTSKKMKRDTSAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25446 with Med15 domain of Kingdom Viridiplantae
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