<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25444

Description Uncharacterized protein
SequenceMDAKVDEMSKAYQELVAAAQAILEARRQPGGENTAAMDAAREAFEQRRKLFAVACDDADALVQSARQSIVSDPGRFVDVVTTPDEDSVRSPTRSSAESSSSSGFGALPDEVLRHILLRLPSAAAAARTSLISRRWRNLWSTLLPKLRFPGVTDLARVGAALRLRVAPGKLCFDVITPAAAAAGAAGTGGAIQIPCFEKATEITIRLRGRLGIQLPPSGVFAKLTALSLSHCRFDDQGQRDLGDAVSSEGCPSLRELRIRDADVVSNLAIRSESLRLVQLSRLEGIRQLTISAPALTELDLYACLLWGMPMVDIFAPALETLHWVDFFSSSSVRFDEKPNVHRLSVYGMVYGRRNTPGSLQLVQHFTEARDVHLSLVYPSIMDMSCELLVQAVKKLPAVEILSLRLLTIGHTFGPCVYHLLKMSTGIRELKLKLEDHIADGEVPCSSGCVCYEPQAWKKNNISLNFLQKVEINNLSGAERQIYFVKRLLRWTMPELKTITLSFDPSVTVSEKVSRKLLSFSTPGICMEIYLHRNGTRVKYSAAN
Length543
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.017
Instability index52.01
Isoelectric point8.75
Molecular weight59722.23
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25444
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.95|      16|      22|     227|     248|       1
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  227-  248 (20.92/26.54)	SLSHCRFddqgqRDlGDAVS.....SE
  252-  272 (22.04/10.55)	SLRELRI.....RD.ADVVSnlairSE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.92|      16|      24|      53|      71|       2
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   53-   68 (26.58/14.38)	VACDDADALVQSARQS
   80-   95 (27.35/ 8.63)	VTTPDEDSVRSPTRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.22|      17|      26|     134|     155|       3
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  134-  155 (23.20/29.39)	RWRnlwSTllP.KLRFPGVTDLA
  162-  179 (27.02/15.62)	RLR...VA..PgKLCFDVITPAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.25|      11|      20|     290|     306|       4
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  290-  306 (15.36/24.27)	ISAPALTELDlyacllW
  313-  323 (22.89/14.19)	IFAPALETLH......W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.63|      11|      20|      18|      28|       5
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   18-   28 (17.85/12.71)	AAQAILEARRQ
   39-   49 (18.78/13.77)	AAREAFEQRRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.21|      15|      26|     401|     415|       7
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  401-  415 (28.11/20.92)	LSLRLLT.IGHTFGPC
  429-  444 (22.10/14.85)	LKLKLEDhIADGEVPC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25444 with Med32 domain of Kingdom Viridiplantae
Unable to open file!