<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25443

Description Uncharacterized protein
SequenceMVPAGGGGGELERRVMAALKASEARGDQPLVWAVEVARVVAGEGAGLPSADLAGILVSNLCFAHNSPSLWKLVGHAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLRSNVTSSFLSMEAGPNRDKITKSIDDALQLSKIYGFSGIDNGHVIIFFMMFVITKLIDCTLEDCGFPSGLTEEQGSIYAIEGPQDMDLDVKGVSTEKQNEHRAQLRRKNTVMALDVLIMMVADRKIQSFLRLIFLNMPEKFSVLSQRLSLVEAHKMELETLLTANHKIDDLLMNMRRVSNTAYQPNNKRLLGVLGNMKYGGSMLGQFTGAGRAACWVIFDIYVENAIDGKHLSAISAIEVLKEMTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDSRLCMLLALIPLSIGAILKEETDVHGAQGSKSLPKTSGLVSSLQDLIQYSGLLVPPSSVVNAANAAASKAAAFKANYKSGGGNPGMMGQNDSSTKTVGNMLHLIVEACISRNLIDTSSYLWPGYVVSSGHLKDATLPQESPWLNFMQGAPLSGPLIDALIATPASSTTELDRLYHITLNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQGSMSHYLAQMSTLNALLLGISYGDAIHIISLYGMGKKYPPDLFFTSPQSKNYGTAYKSMQLLLPLIANILSSYSFVIVVAVPDVAAALMPICEVFGSIPPPSNHKPAIVGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNHIDFANSSASSRNSSNNIGPLNEVPAQPLYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKPVVSSGNLSSTSSSSVSGSSVSTPDDYQRPTVPAWEFLEAVPFVLEAVLTACAHGRFSSRDLTTSLRDLVDFLPASIAAIVSYFLAEITRGIWKMVPMNGTEWPSPGASLHSIEAEIKEILASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKSSEYIHAISGQALENCAGGSSWPSMPIIAALWTQKVRRWHDFIILSCLRSPFGRDKDAVAQLIQSCFSSFLRSSCSGSDFTANRGVGALMGDAITGQGLQLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWADKLANGFSSSGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVLYEETLPTLLLSAREESMKDPGPVSSTLQGYAMANMLFFCGSLLWGAERTSPVMKLSFLSRRPRVVGNHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIASGLRSWNEHDLALALLERGGPQAISTVVDTLL
Length1361
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.08
Grand average of hydropathy0.147
Instability index48.41
Isoelectric point8.29
Molecular weight147800.80
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25443
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1132.28|     374|     506|     405|     827|       2
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  405-  827 (566.32/463.04)	LLALIPLSIGAILkeETDVHGAQGSKSlpktsgLVSSLQDLIQYsgllVPPS..SVVNAANAAASKaAAFKANYKSGG..GNPGM.MGQNDSSTK................TVGNMLHLIVEACISRNL...IDTSSylwpGYV..VSSGHLKDATlpQESPWLNFmqgaplsgPLIDALIatpassTTELDRlYH..ITL....NGSEEEKSAAAKIL..CGASFV..............CGWNIQEYVVRMVVKL.LSPPLPSNSSTQGSMSHYLAQMSTLNALllgISYGDAIhiisLYGMGKKYPPDL.FFTSPQSKNYGTAYKSMQLLLPLIAnILSSYSFVIVVAVPDVAAALMPICEvfGSIPPPSNHKPAIVGeisvYSVFSCAFLCLLRLW..KFYKPPQEYCLAGRGGSVrLELTLDYLLLMRNNHIDFANSSASSRNSSNNIGPL..NEVPA..QPLYIDSFPK....LRAW
  902- 1335 (565.96/352.73)	FLEAVPFVLEAVL..TACAHGRFSSRD......LTTSLRDLVDF....LPASiaAIVSYFLAEITR.GIWKMVPMNGTewPSPGAsLHSIEAEIKeilasagiqipscyprGVPPMLPLPMAALVSLTItfkLDKSS....EYIhaISGQALENCA..GGSSWPSM........PIIAALW......TQKVRR.WHdfIILsclrSPFGRDKDAVAQLIqsCFSSFLrsscsgsdftanrgVGALMGDAITGQGLQLpMAPGFIYLRTCRTFHDTYFVSEVILKQV...IEWADKL....ANGFSSSGPPQLkSGRTPLSSAACMAHQVAMLGGGLLC.VAGGPLLVQVLYEETLPTLLLSARE..ESMKDPGPVSSTLQG....YAMANMLFFCGSLLWgaERTSPVMKLSFLSRRPRV.VGNHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLvvKFVPSwlRDIKLDTLKKiasgLRSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.29|      40|     156|      77|     116|       3
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   77-  116 (70.47/54.58)	VASR.LLCPLHVLALLTPR...VLPQRRAQPEAYRLYLE.LLRSN
  234-  278 (53.82/39.56)	VADRkIQSFLRLIFLNMPEkfsVLSQRLSLVEAHKMELEtLLTAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25443 with Med33 domain of Kingdom Viridiplantae
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