<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25442

Description Uncharacterized protein
SequenceMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINDSRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGVTQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSVLIEWLFNQFQERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAGGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYLSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLLRNVKFTGRRDLSQVHLAVSILKNKMDEINNLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHRRILKQLPGSSLFEILEEDRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSSCVPKASDLFLASGGDKHGRVPEQVEDVKALVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQIDTVDVKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAKVVRKTQSLAQLASSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKMNVRNSRIVPNMKDIIQRQTEEKKGITAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVASAVSAIVLNAGHTIAKHLDLSAGNYHGVSSMGSSLSSIRHILHVHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNDLSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWASLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSEAAEGLQSALDHLEMPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSSMSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2094
PositionKinase
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.262
Instability index51.57
Isoelectric point8.61
Molecular weight231437.44
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25442
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.95|      51|     546|     239|     289|       3
---------------------------------------------------------------------------
  239-  289 (88.53/49.84)	AGGSDNH.RSNQWTNDV...VEYLQQLLDEFCLKEVPPSFREQSSPGLIAGVTQV
  794-  848 (77.41/42.68)	ASGGDKHgRVPEQVEDVkalVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     295.27|     100|     667|     990|    1133|       4
---------------------------------------------------------------------------
 1023- 1133 (140.32/156.98)	ATARQPASgafAYTRYFLKKYRDVPSVAR..wEKSFR...TTCDQRLLAELdngRSV.DGDLVSSSGvSAGEEIDEQIRQkmNVRNSRIVPNMKDIIQRQTEEKKGITApKSPSVDR
 1695- 1801 (154.95/82.08)	ADAKRPSK...ANPHNVDRSFEGIRSINKyltEKALSelmLPCIDRSSAEF...RSIfAGDLVKQMG.TISEHIKAIARN..GTKQSGLVPSGTEAASNKSSSRKGIRG.GSPNIGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     370.55|     125|     667|     611|     752|       5
---------------------------------------------------------------------------
  611-  742 (191.57/120.39)	NTAKGSSLNNTSLAATVS....DS..SGLRNNAKSVDEKDKKDIFEspgPLHDIIVCWLDQHEVNSAVG.FK...RVDVLiIELIRsgIFYPQAY.VRQLIISGITDKNdTLLDVERKRRHRRILKQLPGS.SLFEILEEDRIT
 1276- 1412 (178.98/93.78)	NTGKGFVGRTTKVAAAISalvvGSviHGVVNIERMVAVLKIKDGLD...ILHLLRGLRSSTNGVSRSTGtFKmenSVEVL.VHWFR..ILLGNCRtVYDGLIADILGES.YVLALSRLQRMLPLSMVLPPAySIFAMVLWKRYT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.22|      16|     421|      19|      34|       6
---------------------------------------------------------------------------
   19-   34 (32.17/17.75)	AGGGGRDSSRLDGSPY
  441-  456 (32.05/17.66)	AGGGIAGSKRQDGYRY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25442 with Med12 domain of Kingdom Viridiplantae
Unable to open file!