<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25441

Description Uncharacterized protein
SequenceMAPPSMDYWLGFFRGAGDSIFDAIDAAIAVAASDHPAALRSRRDAIAERLYTAHLVPGAPPAVPPAGGGGAAADAPPAQLLLHPEGAASVPSLCSSDRAEVITDDDGAVPRRDDDPVAAETECIKAILLNDQEKSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQYQDASPARGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
Length451
PositionUnknown
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.05
Grand average of hydropathy-0.873
Instability index61.55
Isoelectric point6.35
Molecular weight49878.81
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25441
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.28|      17|      17|     327|     343|       1
---------------------------------------------------------------------------
  281-  297 (29.98/12.25)	RPLPPVAQQYDPDQSWK
  307-  323 (24.34/ 8.66)	RPQELSNGQTREQFIAA
  327-  343 (31.12/12.97)	RPSNPESGPGRPQPRTK
  346-  362 (26.83/10.25)	QDASPARGRSQPMPSDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.00|      54|     218|       1|      57|       2
---------------------------------------------------------------------------
    1-   57 (86.25/62.41)	MAPPSMDYWlGFFRGAGDSI..FDAIDAAIAVAASDHPAALRSR..RDaiAERLYTAHLVP
  221-  278 (85.75/52.13)	LSSPSMDEG.ALFATPSTSIrlSEENQGSKFFDGMDDDGNTRSNggRD..NGRLYTRNQEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.22|      44|     234|     132|     177|       3
---------------------------------------------------------------------------
  132-  177 (62.84/50.64)	QEKSEATLLELLRRlQQLELTVDT.LTVTEiGKAVSSYRK.HNSKQIR
  368-  413 (62.38/41.21)	DENSVRAKLELAKN.AKLELTNSAkLEVTK.RKLQEGYQEfDNAKKQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.21|      12|      18|      78|      91|       6
---------------------------------------------------------------------------
   78-   91 (17.05/16.31)	AQLLLHPEGAasVP
   99-  110 (21.16/12.70)	AEVITDDDGA..VP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25441 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPVAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQYQDASPARGRSQPMPSDKPASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGRPRNNSNFNNNRNWSR
2) RDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSI
241
198
451
239










Molecular Recognition Features






MoRF SequenceStartStop




1) MDYWLGF
6
12