<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25440

Description Uncharacterized protein
SequenceMSGTPLPPPAQPPPPPGAAGPDGAAALPPPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDLTCNNESLRSRQIHPLDMSHLTKMTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRISRAMHHISKAFTTACSKLEKIGHVETEPDTAASESKTQKEAIDLKELKRVDHILMSLQRKLQPAPPPPPFPEGYVPSEQEKASDDLLASEALPPQVDPIIDQGPAKRPRFQ
Length258
PositionHead
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.07
Grand average of hydropathy-0.461
Instability index73.16
Isoelectric point5.81
Molecular weight28625.44
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25440
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.48|      11|     199|       5|      17|       1
---------------------------------------------------------------------------
    5-   17 (24.20/12.67)	PLPPPaqPPPPPG
  210-  220 (27.28/ 9.84)	PAPPP..PPFPEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.10|      55|      68|      50|     104|       3
---------------------------------------------------------------------------
   50-  104 (98.35/70.39)	PLDRNLVFDYFAL.SPFYD..LTCNNESLR.SRQIHPLDMSHLTKMTGMEYVLSDVMEP
  117-  175 (81.74/57.38)	PEKSNAMLAYYILdGSIYQapQLCSVFASRiSRAMHHISKAFTTACSKLEKIGHVETEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25440 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSGTPLPPPAQPPPPPGAAGPDGAAALPPPPG
2) MSLQRKLQPAPPPPPFPEGYVPSEQEKASDDLLASEALPPQVDPIIDQGPAKRPRFQ
1
202
32
258










Molecular Recognition Features






MoRF SequenceStartStop




1) FPEGYVPSEQEKASDDLLASEAL
2) MSLQRKL
3) VDPIIDQGPAKRPRF
217
202
243
239
208
257