<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25434

Description Uncharacterized protein
SequenceMERATAAHPASSSVSAAHWMATEDLGLRRNIVNNMVKKFMTITNSQQDHHYREIQNYAIRCEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQCQVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKLTEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVHKGMQNIFPIFQQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCASVKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEAKKPFSRLIETLLSSSPEALRHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLVDTVMNIADENGTDEIIYQNGGGMLIKLSYNSMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISYAVAVAFGRAVDELLEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRAG
Length980
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.04
Grand average of hydropathy-0.539
Instability index61.88
Isoelectric point8.81
Molecular weight107408.05
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25434
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     185.22|      21|      22|     584|     604|       1
---------------------------------------------------------------------------
  516-  532 (18.94/ 6.53)	...STN.TIEECFTPSPVTQT
  537-  557 (34.03/18.03)	QVASPHVTSPGAYGKSSVPKP
  561-  580 (28.63/13.91)	RVVSHS.ASIKSRLASSPSRP
  584-  604 (36.61/19.99)	HAASPNITSVESTLPTPIAKP
  608-  627 (35.05/18.80)	RAASP.CTPVKSTSQSQLSKP
  631-  650 (31.95/16.44)	EVDSCR.ACVTSKLKSPVGKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     237.98|      45|      59|     172|     216|       2
---------------------------------------------------------------------------
  105-  160 (55.88/20.76)	QRPSSQQQNVCTTPQNPGQVPDQHrasaPNSqIEASQEQTVmvaapdCYLNFNTTA
  172-  216 (79.14/31.94)	QQPQSQQHQQQAKQLHPTNVVGYN....PTS.LNQIQGQSV......SGQNFQQNH
  219-  248 (45.28/15.67)	GQNASGSGTQQ.RQLVETP....E....QHQ.LLRM................KQQH
  249-  287 (57.69/21.63)	MRGNQQQNFTQRNQILPA.....Q....QAH.LGKMQIGHP......AVKNNQQN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.10|      23|      24|     744|     766|       3
---------------------------------------------------------------------------
  744-  766 (40.66/23.13)	RHSSNSMRLAIWEADRIPAPSPL
  769-  791 (39.44/22.24)	RPRNGKMKRDFDHVTSRPISSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.66|      48|      50|     412|     461|       6
---------------------------------------------------------------------------
  412-  461 (76.63/45.25)	QQYLGQLRLSISKSKARKTVAKIGCQSQNCSENSHIvnLGSNTAPFTCDA
  464-  511 (84.03/44.74)	QQKQQEQVISAKTSRMEQAIMTRTPTPQQESHGCHL..LGVPSSCFSPKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25434 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HRVVAPTVANGGSSNQAIHTLVSAVPPKAAHQADDQVQNGAEEMEA
2) KVRRSQSLQAGTTPSAQRPSSQQQNVCTTPQNPGQVPDQHRASAPNSQIEASQEQ
3) PAPSPLPYRPRNGKMKRDFDHVTSRPISSPL
4) PVAMCVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVKNNQQNVGMSCQPMTPPQC
5) TCDASRQQKQQEQVISAKTSRMEQAIMTRTPTPQQESH
6) TQTVQPIQVASPHVTSPGAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCTPVKSTSQSQLSKP
679
89
761
163
458
530
724
143
791
300
495
627










Molecular Recognition Features






MoRF SequenceStartStop




1) PLPYRPR
765
771