<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25433

Description Uncharacterized protein
SequenceMDAKDLVEIGMKEEDITTMLFGKKVIELTEDAFDGSKEERKIYEELFCRTGTSGASTRHPRRDGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQKMQKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVRQRRDRGQHKYGHSHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSFLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESELSNPRNADNPLGLNHSNNFNSTHPRSRKNLLPLLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPLYFPPNYSPSDLVENAEINDPSFHAYDMIESANVDNSADSPDELLLGANLLFSHEVDEMLLDDISNEHYCTAAVSEPQAKNIDLEDGPSGPSSVVSEKDTGLKANKDVINNEQHDDGVVAESQLANTDVMDRPAGALSFLPTMDTVLEGNEMSSEEMTKGGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMRSCLNASNGTMGTNVQLGIQSSVYEASLIRGFLYLDNEGSPICWTVLNPEPPRQLICSEPISKASELHGEMNMECGMLTSGPKQTSKLDSSKNNRKRSKKAANIEDKGSQKKQKVNDVPQVPIKNSDNDQARVRIGSAEKIVPEKTPKKDVKRQKASSRHKCKFDDNDLLVTAVIHKLTARYRNRFSRRLAKKSGFKRLPRCRWKSEERRDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIRCRCCDMVFTMSMFKYHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADENDDTCGLCGDGGELICCDNCPASYHQDCLPCQDIPDGSWYCYRCLCDICGEVINLKELRSSLPALECAQCERQYHAKCIYGKLLCNEEGGPCAWFCGRRCQQIYMNLRSRVGIPIHTIDGFSCTVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDRIISVASIRLHGTVVAEMPLIATCLENRQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTMAFGFVPIDDLDRKNLSRLRLVSVPGTVLLKRNLYECPGTNAAGGGGGGGGSKENLAFVDRSVAVTAADAGQQRPFEDRSPVSCAVDSLADELRSLKINSSCENRRRLGKTTVISASTLSAACRIQGLERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFNGFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQKRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSPIYTRNEPGESGLCFSSAPYSYMDGLSMPLPSVQRDYTPRAIDISYTEGSGDKQWSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSSCVLFYNYSDYIRLKHMVTQGFAEQGTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFPTPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIFKNETLKEISNRVPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPMASGRVLPAWQSARIA
Length2505
PositionUnknown
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.495
Instability index49.40
Isoelectric point8.24
Molecular weight281017.40
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25433
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     760.02|     249|     272|    1338|    1609|       1
---------------------------------------------------------------------------
 1338- 1609 (380.87/316.32)	SPVSCavDSLADElRSL...KINSSCENRRRLGKTTVISAS.TLSAACRIQGlerlQAPSIEKAWRSLRNTQVARKN.YLR..PGLSGKvkdCDSDHAHTYGTSSSYnvnKMDSVSRNRNPTQESMHQTTESGTMEKNSSHLpAGTK...SCTRTYLNNHVVQADTITTTNQSLarTGPELFKTAPFIDNMCDDAKLDAM..DEDELLASIDVDRI...VMEHYQATNTPRGSSKSpLEKCNfngfDENNLPQELSIMCDHgsKLAF.CPE..AKSH.LLEMKDNLLAISH
 1617- 1884 (379.15/253.24)	SPQQS..DDLHQK.RALlkkQIELLGEYTARLTQDEERQQShSMASTTAHQG....HHPTSILSSSFVKDTNIFQSPiYTRnePGESGL...CFSSAPYSYMDGLSM...PLPSVQRDYTPRAIDISYTEGSGDKQWSSTHF.AWTKeleANNKRVFGNRSFRPNQREIINATM..SGNDVFVLMPTGGGKSLTYQLPALicNGVTLVVSPLVSLIqdqIMHLLQANISAAYLSAS.MEWSE....QQEILRELMSPTCTY..KLLYvTPEkiAKSDaLLRQLENLYSRGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.63|      18|      77|     998|    1015|       2
---------------------------------------------------------------------------
  998- 1015 (38.49/24.98)	LCG.DGG..ELICCDNCPASY
 1075- 1095 (30.15/17.63)	LCNeEGGpcAWFCGRRCQQIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.40|      15|      15|     470|     484|       3
---------------------------------------------------------------------------
  448-  463 (20.05/ 9.11)	PSYSKSNLTQSiQDKS
  470-  484 (25.86/13.95)	PNYSPSDLVEN.AEIN
  486-  500 (25.49/13.64)	PSFHAYDMIES.ANVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      18|      18|     350|     367|       4
---------------------------------------------------------------------------
  350-  367 (34.20/27.11)	NPLGLNHSNNFNSTHPRS
  370-  387 (27.91/20.22)	NLLPLLQSDDLDGNSSRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.50|      26|      78|    1183|    1217|       5
---------------------------------------------------------------------------
 1111- 1137 (42.31/30.47)	GFSCTVLRNNgDQRVSTA.........ADIAILAEC
 1183- 1217 (39.19/49.57)	GFYTVVLEND.DRIISVAsirlhgtvvAEMPLIATC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.85|      15|     172|     535|     562|       6
---------------------------------------------------------------------------
  535-  549 (25.33/13.06)	CTAAVSEPQAKNIDL
  669-  683 (24.52/16.77)	CLNASNGTMGTNVQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     503.90|     135|     142|    1992|    2131|       7
---------------------------------------------------------------------------
 1891- 1986 (106.88/71.11)	..................................DEAHCVS..QW.GHD..............F.R.....PDYQFFIHQHLGILKQKF.PQTPVLALTATatasvkedvvqvlGLANCIIFRQSFNRPN.LRYFV..........WPKTKKCLEDIHNfI.HaNH
 1992- 2131 (215.45/176.99)	IIYCLSRMDCEKVaAKLREYGhKAshYHGSMDPEDRANIQK..QW.SKDRINIICATVAFGMgINK.....PDVRFVIHHSLPKSIEGY.HQECGRAGRDS.............QLSSCVLFYNYSDYIR.LKHMVTQGFAEQGTSAPRGGSSQEQALE.T.H.KE
 2137- 2275 (181.57/129.43)	VSYCENDVDCRRL.LQLIHFG.EM..FNPSCCAKTCDNCLKelRWvEKDVTNIARQLVDLVM.MTKqtystTHILEVYRGSVNQNVKKHrHDTLSLHGAGK.............HLAK.......GEAARiLRHLVIEEILIEDVKKSENYGSVSSVLK.TnH.KK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.33|      28|     802|      43|      71|       9
---------------------------------------------------------------------------
   43-   71 (48.08/30.47)	YEELFCR..TGTSGAStRHPRRDGKSSSLRD
  848-  877 (49.24/27.00)	YRNRFSRrlAKKSGFK.RLPRCRWKSEERRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.50|      38|     101|     606|     643|      12
---------------------------------------------------------------------------
  606-  643 (67.72/38.25)	PTMDTVLEGNE....MSSEEMTKGGQLSCE.GTNNAMVISEPQ
  707-  749 (62.78/34.92)	PICWTVLNPEPprqlICSEPISKASELHGEmNMECGMLTSGPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.99|      22|     103|     912|     952|      13
---------------------------------------------------------------------------
  928-  952 (38.35/55.10)	RC.CDMVFTMSMFKYhagLRQEIPSL
 1034- 1056 (36.64/12.43)	RClCDICGEVINLKE...LRSSLPAL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25433 with Med34 domain of Kingdom Viridiplantae
Unable to open file!