<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25426

Description Uncharacterized protein
SequenceMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHPARSSIADLFTLYLGMNSKQRVEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSPIKGAEFSSLDSLRPHGVDQADALQLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIVGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAIVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIHLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLRELSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRIELQKALGNHLSGKERYPPFFDDIAARLLLVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPYTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length1565
PositionTail
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.08
Grand average of hydropathy-0.064
Instability index47.09
Isoelectric point6.75
Molecular weight175610.35
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25426
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     329.63|     100|     789|     583|     696|       1
---------------------------------------------------------------------------
  226-  342 (88.70/55.66)	........................E..FSSLDS.lRPHGVdqadalqlqtlrlerplhewmhlcldvIWIL.....VNEDKCR........VPFYELVRS.NLQfleniPDDEalvsiiMEIHRrrDMVCMHMQMLDQ...HLhCPTFATHR....FLSQSYPSI
  583-  692 (166.78/154.75)	DEWW........KQMTKASGERMID..FTSLDE..RAMGM...........................FWVL..SFTMAQPACEavMNWFTSVGVADLIQGpNLQ.....PNER......MTMMR..ETYPLSMSLLSGlsiNL.CLKLAFQLeetiFLGQNVPSI
 1366- 1442 (74.15/45.24)	DCWWladssrpvKELDSAVGYALLDptWASQDNtsTAIGN...........................IVALlhSFFSNLP.....HEWLESTHT..VIK..HLR.....PVNS......VAMLR.........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.43|      72|     347|     126|     205|       2
---------------------------------------------------------------------------
  126-  172 (41.28/40.93)	.............................................................................................................................................................................................................................................................................................................EFLLF....ATRCLCARG......HLRWDSLlpsLLNVVSSVEVPMgQGVSvttGGP
  173-  205 (30.17/16.24)	ATSSSSAIAV.PNAPSFHPSNpTSPLSA.MNTIGS...................................................................................................................................................................................................................................................................................................................................
  472-  518 (33.91/15.60)	...................................ptqsgidqpiganvspikgaefssldslrphgvdqadalqlqtlrlerplhewmhlcldviwilvnedkcrvpfyelvrsnlqflenipddealvsiimeihrrrdmvcmhmqmldqhlhcptfathrflsqsypsivgesvanlryspitypsvlgeplhgedlansipkggldweralrclrhalrttpspdwwrrvllvapcyrqhpqqsstpgavfspdmigeavadrtiellrltnsetqcwqdwllfadiffflmksgciDFLDFvdklASRVTNSDQqilrsnHVTW......LLAQIIRIEIVM.NTLS...SDP
  521-  576 (58.06/31.31)	VETTRKIISFhKEDKSLDPNN.ISPQSIlLDFISS......................................................................................................................................................................................................................................................................sqtlRIWSF....NT...SIRE......HLNSDQL..........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.28|      56|     183|     806|     861|       3
---------------------------------------------------------------------------
  806-  861 (96.52/66.50)	FTETLNRITIISLAITMKTRGIAEVEHIIHL..QPLLEQ.IMATSQHTWSEKTLRYFPP
  992- 1050 (90.76/62.03)	WTHELLPLDILLLALIDRDDDPYALRLVINLleRPELQQrIKAFCTSRSPEHWLKNQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.21|      58|      83|    1166|    1227|       5
---------------------------------------------------------------------------
 1166- 1227 (84.45/80.55)	SICPPPEYFANLLFGLVNNViPPLSCKSKSNpSDAAGSTARTTyNKPyTSSAGGISNSDGQR
 1252- 1309 (99.76/71.12)	SLCVPASQIVSSLVQIIAHV.QAMLIQSNSG.HGMSGGLGQNS.GVP.TSSGGGVEPVGANR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.06|      47|     788|      77|     124|       6
---------------------------------------------------------------------------
   77-  124 (80.70/69.52)	RD.LPPR.DE..QFISDFEQLHMQFPDQEQlQAVTESVLISFVLQCSSHA.PQ
  864-  915 (67.36/51.93)	RDfLMGRmDKrgQAIQAWQQAETTVINQCN.QLLSPSAEPTYVMTYLSHSfPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.21|      16|     183|    1341|    1356|      11
---------------------------------------------------------------------------
 1341- 1356 (29.55/17.29)	CGLLLAQLPPEFHTLL
 1526- 1541 (29.66/17.39)	CGKVMEILRPDVQHLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25426 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHH
1
35










Molecular Recognition Features






MoRF SequenceStartStop




1) FTLYL
45
49