<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25423

Description Uncharacterized protein
SequenceMASNMQPSGPPQQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAVPMAYQPARPMSSGPLQPPATFSGGHMPTMGGPIPPPSYTAISTIICSSSHSAILGYSSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELESWIFFLGLARPKRPWQFQGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKTSTQWRKVQERLEDDDAVPDLKRSIDWEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLRAKEVKEAKKRQRLGEISQIFVLDAGATAWANSSVLSIESEISASSTWDDSKALFEDSQEYNWKEVSSVNRILVFNLVPLDGEQTEEGKGVEKREMDGASIGRCLVYEVSMALPQPLDGEQTEEGKGEGIGQRTYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRHHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
Length1026
PositionUnknown
OrganismOryza sativa subsp. indica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-1.124
Instability index54.12
Isoelectric point5.80
Molecular weight116779.41
Publications
PubMed=15685292

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25423
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.56|      35|      36|     790|     824|       1
---------------------------------------------------------------------------
  767-  788 (21.41/ 7.62)	.......EDSQ..EYNWKEV..SSVNRILVFNL....
  790-  824 (60.10/35.11)	PLDGEQTEEGK..GVEKREMDGASIGRCLVYEVSMAL
  827-  862 (52.05/29.39)	PLDGEQTEEGKgeGIGQRTYSRELFEECVVH.LKERL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     157.91|      24|      24|     875|     898|       2
---------------------------------------------------------------------------
  573-  592 (22.97/ 7.68)	.....EEEEHKRIHKEQVRRQ.ERKN
  878-  898 (29.38/11.87)	....KEREEKERRKEKEKKEK.ERKE
  901-  919 (24.39/ 8.61)	RdKEK.....EREKDKGK.DR.SRKD
  933-  952 (26.20/ 9.79)	S.KDKKRE.....KDKEKKHKrHHHD
  961-  984 (32.44/13.87)	R.DEKDDSKKSRRHSSDRKKS.RKHT
  990- 1008 (22.54/ 7.39)	.....DSENRHKRHKKD.RDS.SRRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.21|      39|      39|     159|     197|       3
---------------------------------------------------------------------------
  159-  197 (73.94/36.78)	SS...DWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERA
  200-  238 (70.24/34.62)	ST...EWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELA
  242-  272 (31.03/11.70)	SNprpDQETETTAGAPSGPTSNSVEPSS..VPA.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     135.55|      15|      19|      11|      25|       4
---------------------------------------------------------------------------
   11-   25 (31.74/14.07)	PQQSRPPMMGSSVPP
   33-   46 (27.30/11.21)	PMQFR.PVIHQQQPP
   52-   64 (23.79/ 8.96)	GQQFRP..VGQAMPG
  100-  114 (26.78/10.89)	YQPARPMSSGPLQPP
  117-  131 (25.94/10.34)	FSGGHMPTMGGPIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.12|      39|      39|     469|     507|       5
---------------------------------------------------------------------------
  409-  439 (39.45/24.80)	.........EAKNA.FKALL.ESSNVESDWTWDQAMRVIIND
  445-  468 (32.76/19.08)	LK..TLGERK..QA.FNEYLNQRKKLEA.............E
  469-  507 (65.83/47.35)	ER..RIKQRKARDD.FLAMLEESKELTSSTRWSKAITMFEDD
  508-  548 (50.09/33.90)	ERfsAVERPREREDlFESYLMELQKKT.STQWRKVQERLEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.43|      26|      40|     292|     317|       6
---------------------------------------------------------------------------
  292-  317 (50.86/31.93)	SVPPGAGPSH.NMENTSSSSNTAMQNG
  333-  359 (41.56/24.69)	SVASDAGISRaNNEYPSLASTADTQNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     207.03|      54|      59|     601|     659|       7
---------------------------------------------------------------------------
  562-  642 (76.10/44.95)	IFQEYIRDLEK......eeeehkrihkeqvrrqerknrdefrkmlEEHVAEGMLTAKTRW..R..........DYCAQVKDSSVYLAVASNISGSMPKD
  643-  702 (63.00/47.12)	LFEDVMEELEKqyqddK.........................ariKEAVKSGKIPMTTSWtlE..........DFETAVTEDDT.LKGITNIN..M.KL
  703-  760 (67.93/39.33)	IFDDQVERL.......R............................AKEVKE....AKKRQ..RlgeisqifvlDAGATAWANSSVLSIESEISASSTWD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25423 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQN
2) KERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRHHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
3) MASNMQPSGPPQQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAVPMAYQPARPMSSGPLQPPATFSGGHMPTMGGPIP
227
865
1
358
1026
130










Molecular Recognition Features






MoRF SequenceStartStop




1) HKRHHH
946
951