<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25378

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMADVVRRTDQYSPKSSPRGSRSPVVSRQDTTGTLKTTISLGKTPAIVHSGPFYLMKEPPKSELTGATNLMVSYGLEHSYNKFSGRKVKDQLSAFLPNLPGNIDAPGDQDNSSLRSLIEKPPVGGKELLALSGAQLVGFRLHPGPLPEQYRMMSQQPQRKKHKHKKHKHKMGDTPNHESQQQENASDASHEKKHKKQKRHDEEKERKKKKKEKKKKKKHSPEATPANPGNPALPNGAQRVM
Length240
PositionHead
OrganismIxodes scapularis (Black-legged tick) (Deer tick)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Parasitiformes> Ixodida> Ixodoidea> Ixodidae> Ixodinae> Ixodes.
Aromaticity0.04
Grand average of hydropathy-1.229
Instability index59.17
Isoelectric point10.10
Molecular weight26807.24
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25378
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.24|      14|      45|      13|      26|       1
---------------------------------------------------------------------------
   13-   26 (25.80/13.19)	PKSSPRGSRSPVVS
   59-   72 (24.44/12.18)	PKSELTGATNLMVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.21|      14|      16|     189|     202|       3
---------------------------------------------------------------------------
  189-  202 (25.46/13.12)	HEKKHKKQKRHDEE
  208-  221 (23.75/11.78)	KKKEKKKKKKHSPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25378 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MADVVRRTDQYSPKSSPRGSRSPVVSRQDTTGTLKTTISL
2) QLSAFLPNLPGNIDAPGDQDNSSLRSLIEKPPVGGKELLALSGAQLVGFRLHPGPLPEQYRMMSQQPQRKKHKHKKHKHKMGDTPNHESQQQENASDASHEKKHKKQKRHDEEKERKKKKKEKKKKKKHSPEATPANPGNPALPNGAQRVM
1
90
40
240










Molecular Recognition Features






MoRF SequenceStartStop




1) DASHEKKHKKQKRHDEEKERKKKKKEKKKKKKHSPEATP
2) RKKHKHKKHKHKM
186
158
224
170