<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25365

Description Heat shock cognate 70 kDa protein 2
SequenceMAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLVGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDAKLWPFKVIPGSGDKPMIGVQFRGEEKQFSAEEISSMILNKMKETAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKSSSDGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPRVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNEKVQDLLLLDVSPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDMDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHQKKVNAKNTLENYAYNMRNTIRDDKIASKLPEDDKKKIDDAVEGAINWLDNNQLAEVDEFEDKMKELEGICNPIIAKMYQGAAGPDMAGGMDQDASPAGGSGAGPKIEEVD
Length649
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.455
Instability index34.22
Isoelectric point5.06
Molecular weight71137.52
Publications
PubMed=18937034

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25365
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.71|      23|      93|     103|     140|       1
---------------------------------------------------------------------------
  114-  136 (37.35/46.64)	EEKQFSAEEISSMILNKMKETAE
  512-  534 (37.36/11.52)	DKGRLSKEEIEKMVQEAEKYKAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.35|      61|     239|     137|     260|       2
---------------------------------------------------------------------------
  195-  260 (97.49/141.58)	SDGEKNVLIFDLGGG...TFDVSLLtieeGIFEVK....ATAGDTHLG.GEDFD.NRLVNhFVQEFK...RKNKKDIT
  438-  510 (84.86/31.44)	SDNQPGVLIQVYEGErarTKDNNLL....GKFELSgippAPRGVPQITvCFDMDaNGILN.VSAEDKttgQKNKITIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     167.88|      47|     238|     333|     380|       3
---------------------------------------------------------------------------
  333-  362 (38.15/20.58)	.......................DKSS.VHDVVLVGGSTRIPRVQQLLQDFFNG
  363-  398 (47.51/27.41)	KELCKSINPDEAVAY.GA.........aVQAAILTGEGN..EKVQDLL......
  572-  600 (33.40/17.11)	.......................DKKK.IDDAV.EGAINWLDNNQLAEVDEFED
  603-  647 (48.81/28.36)	KELEGICNPIIAKMYqGAagpdmAGGM.DQDASPAGGSGAGPKIEE........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.30|      18|      21|      38|      55|       4
---------------------------------------------------------------------------
   16-   33 (18.74/10.07)	....TTYSCVGVWQHDRveIIA
   38-   55 (31.60/21.81)	NR..TTPSYVAFTDSER..LVG
   60-   78 (23.96/14.83)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.05|      13|      94|       3|      15|       5
---------------------------------------------------------------------------
    3-   15 (25.72/16.05)	GKGDGPAIGIDL.G
  100-  113 (22.33/12.91)	GSGDKPMIGVQFrG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25365 with Med37 domain of Kingdom Viridiplantae
Unable to open file!