<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25329

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAETSEKNDDFLLPIDPEALQDSLLAVDSENSLATVIPKIVKKYGLFRSLTESDLREKSEQEEQSQEVQEKAKPTPAKQPTAEEQGLDNLSAHKKELIDQIAMAQNECSLALDMVSLLLSKYRTNSVDTISPFLENAVSLGSLTMNRCEAPKAKSSDALVGKLWKDKALKNARTSFTAAAQRLRNVVEGEQEKWNLFARFHEKGWPILRGKDGALCVQYSALGGQSVGVGTFDLSSKKGKPTFVHGLQYEHASLKVDIHRRDEIVASNRWSWPDEHKTEEDDVEKQLHQARRTLFEMDVWNALLLEAQYCGNQGVIYTGNSIEVTYDGTYKTSISLSPVDSGADEHHKNDLSSDSMNVDDKDVQLRELCLVFNTLIHVLFVQYCRETQKFSLKHLRQNPIPASILRPLIFLFSTNRLAHSFQTWLQEHNIPFTYEAEYPWTKAKSLEELERALMNPKVRILWKLKCKEYYEPACIEQTPVMQGTEKFIWKWQDACASLKFQDMSNLCQYIEYYLAEKNH
Length519
PositionHead
OrganismSchizosaccharomyces japonicus (strain yFS275 / FY16936) (Fission yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Taphrinomycotina> Schizosaccharomycetes> Schizosaccharomycetales> Schizosaccharomycetaceae> Schizosaccharomyces.
Aromaticity0.09
Grand average of hydropathy-0.524
Instability index43.38
Isoelectric point5.64
Molecular weight59294.47
Publications
PubMed=21511999

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
transcription coactivator activity	GO:0003713	IEA:EnsemblFungi

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25329
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.95|      36|      71|     245|     280|       1
---------------------------------------------------------------------------
  245-  280 (66.25/42.09)	HGLQYEHASLKV..DIHRRDEIVASNRWSWPDEHKTEE
  313-  350 (57.70/35.84)	QGVIYTGNSIEVtyDGTYKTSISLSPVDSGADEHHKND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.12|      40|     295|     152|     195|       3
---------------------------------------------------------------------------
  152-  195 (59.12/50.00)	KAKSSDAL........VGKLWKdkaLKnARTSFTAAAQRLRNVVEGEQE...KWN
  442-  492 (62.00/39.68)	KAKSLEELeralmnpkVRILWK...LK.CKEYYEPACIEQTPVMQGTEKfiwKWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.90|      10|      38|     365|     374|       5
---------------------------------------------------------------------------
  365-  374 (18.58/12.60)	LRELCLVFNT
  405-  414 (18.32/12.32)	LRPLIFLFST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25329 with Med17 domain of Kingdom Fungi
Unable to open file!