<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25312
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLIMEDGINMDDLFGEPNSLELGMPAASPIKGLAQCLDEMRLLGCCQKIVWSRMGCIASISQGGLRVNVRYLQCRPSDGKWVLGEETSLAPVLEAHNGNQLAHISWNETGSELAVVDCSGRISIYSISIALNSITGLRQASFDSGDDGSQVVGMMWLNTYRHIHAFHQAAKVNGRWAYSPFRRRSTGPFHPANKGALICVTRAGQIKLIYQNPDSKWAELPAELKNTGYSDRLLTHASMTATQDGILLSTYSACQKMCLYRVDIGWNPSQWEPTLGKPPGQFPVPTFRLIHCKVDMPSNILNVNRGPDHSDQSLPFLNSVYSLTRLEIMPGQFDSLAGSTANPWILAVLSKPLHAIHDYPDQQGPPSVILRWHLESAPQILHSKFDEVPSKKSNAEAKPKMELRRLEDIYCDKYIVSVDLIEHGAVLAVSHDDSSITCYETRTMTVLNGLGDSSTVTCLAQAGFHYPLETSGAWLELIWTGLHIAFSPNACVAVTLDVDGHVQLRVMEHSFGSTEGLYDEKARTTFISEVYRALPVNCNFTAEQDKLMSHPYIPRCLSLQAGLGFKGRLQRRNLSSAVPWASLQLRHASVLFAYFFQYNKGGQTESHDPVKNSSSLPLLVLLASMSRAFLRFICRGLRGVHAGFASTNPASLVGDSRVYYTEICQTLESSPVRIDVYEKFLAGVDSAVKHAYQGAGFGDAERPGPEKELLVNARIPPVLTTAVATLLRQTVPALKSEINRMAIYLGDYSWLGFGNDRRTALYRKQREVDILKKCPLRPPLPLGIDGRVALLKKRRCVRCTEVSGDTNLPRSLLSFKMIAKLSLLRSCLCGGMWVLETDTGDVGVRTASTNGNGNKVSQS |
Length | 860 |
Position | Tail |
Organism | Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium>
Penicillium chrysogenum species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.146 |
Instability index | 46.51 |
Isoelectric point | 8.40 |
Molecular weight | 94857.70 |
Publications | PubMed=18820685
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP25312
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 110.41| 33| 49| 309| 343| 1
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309- 343 (53.81/39.83) DHSDQSLPflNSVYSLTRLE....IMPGQFDSLAGSTAN
359- 395 (56.59/35.40) DYPDQQGP..PSVILRWHLEsapqILHSKFDEVPSKKSN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 155.46| 47| 53| 179| 229| 2
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179- 229 (73.18/58.06) YSPfRRRSTGPFHPANKGALICVTRAGQIKLIYQ.....NPdSKWAelPAELKNTG
230- 281 (82.28/49.75) YSD.RLLTHASMTATQDGILLSTYSACQKMCLYRvdigwNP.SQWE..PTLGKPPG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.22| 16| 27| 752| 767| 3
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752- 767 (30.01/18.50) LGFGNDRRTALYRKQR
781- 796 (28.20/16.96) LPLGIDGRVALLKKRR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 102.42| 26| 191| 611| 638| 4
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576- 604 (25.98/15.32) ...SSAVPwasLQLRHASVLFAyFFQYNKGGQ
611- 638 (38.30/35.48) VknSSSLP...LLVLLASMSRA.FLRFICRGL
645- 668 (38.14/27.51) F..ASTNP.....ASLVGDSRV.YYTEICQTL
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