<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25305

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAESFTLPLRSIPEKRDRPDTLPVEIAQINNQWGSFREVNEDVLRNKIAEEEEKDGLEEVEESDQDAADLDSTERLEQLYKRRAEITQFAMQAHMETMFALDFVSLLLSKQAPRQAETSMSAFLKQVAPLGSLNAEVVHPPPKPESTTKDVSAVSRGWRIQNFNAAANKLLQAASRLETEVASETRYWNEVLAVKDKGWKVSRLPIERQSLGVQYGFIEAAPVFRDRGLASLRRAEDGALSLDEGLIPPKARFVRVRVIQDGRLSGSSKPMRSSFNGDGTIEDRILQARDTVYEDELFHELVREARAIASFGVTTRQNLIQIPASDNLEILLDLVDTDEDTSEHEHSISQQGISIAEGLAHTIRILLAYAHRQNLRRRTQLPLPLTPKTRPVPEHQLIRPALAYIKHMSQVRWLQSLLEDLFGVLKSAGLEPPAYTARIFSTGMQSHSSPAPAVENLVGQFLTPLLSTFNGKILTPRGSFSIAIHTNLSSPPFGTTFEVSFNMPKYPDLESPGKLSHREEVEAAITHLLLLDVVFTISSDSSLKHECDRDPAKRTWEAIYPQHGELLIPTPKSNSGKRKKMKIVLSRHELSLEIYTVRCIDGTGRGNWEMPSYHSMPHTWKPSPIAGPPKPPSLMDFVSKMSRS
Length644
PositionHead
OrganismPenicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium> Penicillium chrysogenum species complex.
Aromaticity0.07
Grand average of hydropathy-0.420
Instability index53.76
Isoelectric point6.18
Molecular weight72232.23
Publications
PubMed=18820685

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25305
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.36|      43|     179|     204|     270|       1
---------------------------------------------------------------------------
   22-   76 (53.59/22.84)	LPVEIAQINNQWGsFREVnEDVLRNKiaeeeekdGLEEVEESDQDAADLDstERL
  204-  246 (73.78/82.86)	LPIERQSLGVQYG.FIEA.APVFRDR........GLASLRRAEDGALSLD..EGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.50|      11|      39|     150|     160|       2
---------------------------------------------------------------------------
  150-  160 (20.77/13.12)	DVSAV.SRGWRI
  190-  201 (15.73/ 8.33)	EVLAVkDKGWKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.86|      14|      33|     363|     376|       3
---------------------------------------------------------------------------
  363-  376 (25.04/15.80)	IRILLAY.AHRQNLR
  398-  412 (21.82/12.93)	IRPALAYiKHMSQVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25305 with Med17 domain of Kingdom Fungi
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