<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25285

Description Uncharacterized protein
SequenceMEVDQLSLADVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTASNLLEPVCATYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFEDISERRQMLDQTNVQRHCILICNSPPYQMPVTESWKYLGKSCEQLAGLFNERKINLSIIAPRKMPILFKLFMKADGDQPITSKNYAKNIRHLVLLKGYSLKERAASPNSMAAQMAAPSTAQAAVQQQQQQQNPGGQQQAGSGMPMDTTAAQQQQQQQQQQGGPPQQQQQVMNMNPMQQQQQQPGPNPQSGLLNPQQQQQLMQQQQQNQFVPQNQMQNPNFQQNVVPGQNRWMYPNQQGQARPPFMQQGAAGGGGNMQQQLQQQQQQQNANSALISRINAPPNQTVNSLQQQQQQQRLQMLNQQQFNQQLQQQLVQQQQQQGQQQQQQQGNPNASNMMPAVSNAGNMPNPQQQQVAQQVAQQNPQQQAQVQVQQQQQQSNPQQQQEQASLREKIWTGLLEWSEKPKNDPQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPSPGEALDSLAKMMTSGYAGCVHFSSIPNAPACELKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQMLQQQGKSPMELQQQQQQQQQQQQQQQMQQQDNSQQQQQHYNPYQLNMQMQGGGGPGPGGGGGPGPGGVGMPMQQNQMQMNMMQQQQQRMPLGVGVPGGVPNPSLQQQLQQQVAPNVAAMQQQAAQQQRMVRPMMSNNNPGLRQLLQHQTTPGNQFRPQMGGGQNPNQMGGAGGPMVGNRNFDDGSYEFM
Length859
PositionUnknown
OrganismDrosophila pseudoobscura pseudoobscura (Fruit fly)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.866
Instability index66.09
Isoelectric point8.76
Molecular weight96114.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25285
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     461.02|      49|      49|     241|     289|       1
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  241-  287 (91.92/18.90)	.......QAAVQQQ..QQ.......QQNPGGQQQAGSG.......M......PMDTTAA...QQQQ..QQQQQQGGPPQQQ
  288-  334 (68.15/11.45)	QQ..vmnMNPMQQQ..QQ.......Q..PGPNPQSGLL.......N......P...Q.....QQQQlmQQQQQNQFVPQNQ
  335-  377 (53.93/ 7.00)	MQnpnfqQNVVPGQ..NR.......WMYPNQQGQARPP.......F......M................QQGAAGGGGNMQ
  378-  423 (54.81/ 7.27)	QQ....lQ...Q.Q..QQ.......QQN......ANSA.......LisrinaPPNQTVN...SLQQ..QQQQQRLQMLNQQ
  424-  484 (63.95/10.14)	QF.....NQQLQQQlvQQ.......QQQQGQQQQQQQGnpnasnmM......PAVSNAGnmpNPQQ..QQVAQQVAQQNPQ
  657-  694 (73.87/13.24)	KQ.....HGNMQQQ..QQ.......QQML..QQQ.GKS..............PMEL......QQQQ..QQQQQQ....QQQ
  791-  836 (54.38/ 7.14)	QQ........AAQQ..QRmvrpmmsNNNPGLRQL...........L......QHQTTPG...NQFR..PQM...GGGQNPN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.15|      14|      25|     583|     601|       3
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  583-  596 (23.48/ 7.92)	VVFRPSPGEALDSL
  608-  621 (24.68/16.43)	VHFSSIPNAPACEL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.40|      15|      69|     704|     718|       5
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  704-  718 (31.02/15.24)	QQQ.QQHYNPYQLNMQ
  775-  790 (23.38/ 8.95)	QQQlQQQVAPNVAAMQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     249.42|      80|     118|      32|     114|       6
---------------------------------------------------------------------------
   32-  114 (130.94/108.05)	YILPTLE..HFTTGSIDEREYLIAERFATLyGIVVYRTASNLLEPVCATYGPflQP...QKVMETIERLPLVGG.GME....SCAHMAEGFAA
  147-  236 (118.48/85.71)	YQMPVTEswKYLGKSCEQLAGLFNERKINL.SIIAPRKMPILFKLFMKADGD..QPitsKNYAKNIRHLVLLKGySLKeraaSPNSMAAQMAA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.86|      10|     118|     719|     728|       7
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  719-  728 (24.70/10.13)	MQGGGGPGPG
  838-  847 (22.16/ 8.37)	MGGAGGPMVG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.85|      17|      27|     513|     531|       8
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  513-  531 (29.40/25.91)	IWTGllEWSEKPKNDPQKI
  543-  559 (32.45/21.59)	IKDG..EPEIKAENWPPKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25285 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AASPNSMAAQMAAPSTAQAAVQQQQQQQNPGGQQQAGSGMPMDTTAAQQQQQQQQQQGGPPQQQQQVMNMNPMQQQQQQPGPNPQSGLLNPQQQQQLMQQQQQNQFVPQNQMQNPNFQQNVVPGQNRWMYPNQQGQARPPFMQQGAAGGGGNMQQQLQQQQQQQNANSALISRINAPPNQTVNSLQQQQQ
2) QQQQQGQQQQQQQGNPNASNMMPAVSNAGNMPNPQQQQVAQQVAQQNPQQQAQVQVQQQQQQSNPQQQQEQASL
3) RLRKVIQQKQHGNMQQQQQQQMLQQQGKSPMELQQQQQQQQQQQQQQQMQQQDNSQQQQQHYNPYQLNMQMQGGGGPGPGGGGGPGPGGVGMPMQQNQMQMNMMQQQQQRMPLGVGVPGGVPNPSLQQQLQQQVAPNVAAMQQQAAQQQRMVRPMMSNNNPGLRQLLQHQTTPGNQFRPQMGGGQNPNQMGGAGGPMVGNRNFDDGSYEFM
224
436
649
413
509
859










Molecular Recognition Features






MoRF SequenceStartStop




1) YNPYQL
710
715