<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25277

Description Uncharacterized protein
SequenceMMIVMSTEEPPTNSYERNNYYDRSSRLSNNYQPTAANSSLSSASSSSSVTPTGAAGGGTGTGTGTTDRSRNRDRLYRNGSAASTTAASTTQSTTTAAATATAGAAPAPPQALGDRSNNNNIQHHQQNTPRVVAPQSWYEAAAAASAQLKSPGGSGSGNAGASAATTTAAAAATAAATATATAQGTAGGFIMSSSPINHQQQQQPHPPPHHLHYSSASGAPSVGCAPSAAATSVSYSSPAQTATTAVHRSVAYAGSAADDRDAMRKSHQHHLHHNNNSSSSGSGSKLNKLLKGGATGRCGSESPGVGGVGAATTMTMTTTSTITNNSFSNNSLNNTITTATPTMPTIASETSVSACASASPGGAAGAGAVAEGSAGSGGVTSGSGGDILNVAAALAAAVDNGTSSSASASASASASTSASACSLASASRPHQRHHHHNHHHNLHGRSTTSSSRSHSRSPSSYSSSHSSSSASSQTSSHSHASSPVQSGIQCADGRSISRSLQSVAVNSTSSNPSGNAGAVAIPSGGCGSSSSSSSSSSSSSSGSGGGHSSSSCLAVNPVVHSEDNRPLAIRVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKIEVEPYQGYDVEDNEFRPYEAELDEYHPKSTRTLFIGNLEKEITASELRVHFESFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLGFGKSMPTNCVWIDGVGEKVSESFLQSQFTRFGAVTKVSIDRQRQLALVLYDQVQNAQAAVKDMRGTIMRGRKLQVDFASRECQDAFYDKQEKLQQQQQQQNAGSSSRFNRYESSTQQSRGRASSFSRLQTNSNDICNDTGSNTPTSGGGTPSASSAMPAPSIASAIAPATATGGASGPGAAASTATLPSVVGSSNSIGSGLSLPPMSPAAMAQVRMRMVRSARHTIDFDFNDVAALRRFRGAAIGNMEEPHDADITATTKVGSRCDSPVIARLGPGPLGSGETPMEATLMNSTSSSSISVGGAGRRRCEQLLLDECPSSGDEGGSVVSPRKRIKMDYHHHHHSNASGLVDPYPSSGDKQQPQQPPLTPLSNCDVIHDPLNRKSEIRRVSEASPLSSSNSNSMKFPGHQPSPSPSLMLSCRRPSIDAGAFAALSSSSAFRHGLTGASGMEQQQQQQHMMNASLAAKRRRVAPMQQPPTMGNNSSSGGGLLLGGGVTGVTPPNDEAYHHHVSRGRGHQLHSHHSHEASGGESADGSRPGTPLCDERPEVLPSEPRRLPPPRERTRERVREVMWLPMPKFGYSFIQQHRSGGGTGGGSTGCSSSSVSSYLLGCSSTAGGPANSNSNSSLSAGLGSGSSAFLPSPSSRYWRSSSHQHQHQHQHHSHHSQQQQQPQQQQQQQSSSGASLGLMASPARPRSLSSNSSDSDVPGHAGGSPSLDERLRNFEENYERWSGGSNTQQQQQQTSSNTNSSHSHSHSHVPQSSSSSGSTTMPSWQLSMHTNLSGLSTHPANSGNGNSNSSSGTASSCHSASNSRHKFLDIDELQPSDIVKSVLAKKSIFDDDLQRLKKNQWYDPSSADFAIGSTAMGSTSTASRHGLCSGNTSPALLPNLAATKTTPIIGNCTPVLSNSSTSSKTTTSGLLQRLSSLSPMNSPQASMSPYNSPSPSPSVGAATPSGQLSAVKPMAGCSNSSSSSTSSSAAGGGVVPTATATVVAAASSSASPAATSGATKGLQYPFPSHPPLPNTAAPPPAVQPAPPPPPETVTQKQQPAAKTPGPPPAAPNSLTKSLSVPAEALPPSQSPSARAQLQKSASVPGSTNVGTTTTSSSSSSSSNAPSSSSNSTSSSNGNSSSATATTTHVQKSQQQQQQNTSEEEHKSKTSTSHSSSHSHSHSHKKSSSSAHSGTGTNRSNSLDKSHSSNRANSTDKSHSVDKSHSVDKHSSVNRSNSKEQATDKSNSTNRSNSSDKSHATATTTTTNRSNSTDRSHSSSSSRHNSRSDGGDKKAKKSDKSSVSSSTGSSDKRKNSATSQSSKSATPRIEDSTDTDDPGERSEKEQRQEREKAHQKERHEREKRKQQEREEKEKERKAHHHQPEDKEKEKAHPERKTQTHHQEEKEKERKSHQEEKEKERKAQQQEEKERDERKAKEEKERKAQEEREQKERDEKEQQRVQEQREQEKREREQREKEHREKEHRERDHREKEKEQSSRRSISDSDQESRMSRMREMSSYHKSKSDASSEASSFYAHNVTPSAAECERQHNKENAADAATVPPSSCPTPTAHDGSNANAAAAKNRSRKSSRNSPGPRIHKRRLSSQDSNHSGGGGGAGVGGLHNHHDDYVKRIRMENHQNPPTPSQNQRLNDQRHDGAKEQQHKSSNSIASSKDCDPNAKTNSSSSHSKSHGSGGSSSSSSKHHRREKHHCKSIASASAPSSMDVVTPSMDVLETPKAALKQQQQQHQLVNTSEEEQQPQPKREKERDREKDREGHHHHSSSSSSRHKSKREREHHREHHREKKRHSVADSTNTDEEQQQHQHMHAHSHLQLQQQELQDQEQDQEHHHNPHRRTSAAGSGSAGELSSAPTNTSSSKGHRDRDRDREGHHHHHGHHHRRRSVDRKSSRGSDEGHHSSKSSQRSKLMMLSSADSDDTDDASKKHSIFDIPDDCPNVSMYDKVKARSCKNMQRQAEEKKIKAKFSQLKQSRAKKKRSTSYDGDSDTEFEDRHHRNSGSSSFHGRHIGLSSSDDDNDDDEDEMMQSHSHSRIFSDSDARSEGCEDHEAVASRALQMQQNLRRLCDGDDSSEDEIRRNFTKHNQHGKRNSHTTRIASDSESQSQPGAPEMEVQIKLEPQPQPEMEMELELEPEIKQEQLSDGGGEQKKTETEYKSRHDSHSSMEDRKLKTEIKKEYGDFYNSAAGGCYSNAYSDSGTGKTIKDYSPETRKKHKKSKKRLKSSSSREVEAAQQQQQPPPSLVVSIATPSIFDVHSSDLKGNKFVDSLDDLKMERERDQERERERERDQESVLPISLEISASERRKHKERKEKKREKMRNLTAETNTIAGSATTAAAPSHMSSGSSSTPAAPPAATAAAAAVPVPSAGSNDLGEKLEKLSKEERHRLKKSKKSKSMDNSSTRLYNAASGNSSLAATAAAAAASTAPVSVPGPVPVPATPTSAPALSRDKTRGEDKMEFIFGIISDEDESQFADEQAEGGTKEISSREPIVSAALQTYKQEPPSTPTPAHTSAKIQENQLPISPKEDQPPVERPPRQTGGSSSSSSHADRERHRKEKREKKRREKSQREQQQQQQQAAIQQQSSSSSATKIEDDNSVDMDEAGRALEAQLMDDFDSKTMPEEATPSTANTYRSDMTDVFRFSDNEDNNSVELKLKPSSMGVPTQPKQPPAGEEQHKSKDKKKKKKRSKEEKQEKMLRRESIPTPGPGPGPPSTPGKLTVNVQAAAKHAGEQMDATKHRSASASPPLCKPSPSLPCLIGDDDDVDVPQPQPHPPKPKVLPSTPTSTGANASASARGSGCDSLTPSREKPRLISPIPKTPTITNSTSSMLSTQSAETPVSSGAGAGAGVGAGAAGVNSSALATTPTSSTTAAAAAAAAASASAESSPTSAALGKKKDIFIPGFDGQLDDRISESAVQSISAEFNSASLLDPLAGEPKIPVASPPGATKPLDKIEDSKSRVTISQEETESAVSALLGESFGTSSTADYSLDGMDESEMEPSASTLVVAEPDEEAALAAKAIEGAVEPPAILEDEPEAEPEPETEAEPPVVVGAGGVLDPDEINKAVQSLRHEDMMDIKADTPQSERDLQIDTDTEENENADEADSSGPSLKIDETVQSSETSSSPEKSMSSSREAAASKASPVADPPSKKSPPSVITKLPSLEQQQQQQQQQKQKPPTSVMISGSSLTSSSPVKIEPPTISKLQQPLVQPVQTVLPAPSAMPPAPAKAAPAPAPAPHKTPMPMPTPTPTPVINLDLSNVMANCSNSSSSGSPSISFGSPTPSQSIPCMPQASTPKQTPTQQLALRTQSLIMQPPTISIPEQTAHFMVPHMVLSPHHPQQQQQQPTTPGPSYMMGIRAQSPHSPLLSPGRGGPPINRVVGQLSPAGRPVPQQQQQQQQQQQQHAVMTSPQGGNMSPMASPTPRVVATNTTSPTTSKPNSYQPRGQQQPHQQQQPHQQQQPHQQQQPSPKSLMDLHSPQSSQSSQLIPMPMQKMPPMQVPHHPTIISKVVTVQPQQATQSQVASSPPLGSLPPLGHKSLHVNAQPQPPHHQAQQQQQQQQQQQQQLSPQMMSKMTAAHQQHQHQQQVHQFMHQQMLQRQQHQQQQQQQQQQQHLQQQQQHGHPHGQQQSQQHQQQSQLHGQQQHQLQLTPAQQHQLQQQQQHPHQAPQQQLTPAQHQHFQQQQQHQMNQQQQQQLNHQQQHAQQQQHQQQQQLNQQQALQAQQLHIQKLQQQVQQHPPQQQQQLGPPPPMFSQHPPRGMPNQQQQQQLAHSPPCKPANPMVHSPSLLVRVPQPQQQQQQQQSSPGATQMQTHPTPQLNVIQSPTAKQPLIVQQHIVPPPAAQAPTTAANAKIHYPTQQNVNPSPNLIKETPVEASGSASLANKTSESVSVIRTPTPTTSGSGSPAIISPKASSATAGGTSLLTEENLIKISSQPKQDELIEQDSKEVDSDYWSAKEVNIDSVIKKLDPREPPPPPAVIKEMPPTVAVAVAAPVEVPPTPTIPTVTPVSTPPPAATSAPAPAPAPAPILTVNDHDTEDETETLQMAPKPSTPTVGRPPGRGGASKRGRQPRGAKKQGGLPLATPGVAAGADAGLGIAPGDNGVQTRLRKPVTAPVTRGRKGRPPRNLLLQQQQLQQQQLAQQQQKAMEMATPTSTPTPIAAAVAAVTPSTPVPTAAEKKARNQALTQAQASNQDVYEFNDDSGEAEPKVKIATVVQPVEDQRPRLILTINKSQPSIRSSTDVEPPAEAQAQPQPQSLSQPPTQAHVHNDATISDNSSESSNTRKSRRLQEKEDRSTVDDIIEDVVRNTNTQMAAGISAGIGAQTPPRRSGRNAQTKKTDLVNPPTNAVGRPRRTKDRKQTISEQPLSSLMEDSSQSSSSPAPPATPILHGPEQHAAHMPQLDTKEVEPTAATPSAVPVPVSHPAAVPTVPVVPVMPVHPTKPTIPQHPKKKAIAAAEIESYQAINSSIPSGGLPMHQTAAPATQKITGGAADAVSKALVDPVTGVITAGMPQGKEGNLPAATAAAPTNSSNEAAPQMQQQQQPHHQHQQQPLPQQQINATVLAPSTAASITAAMGNKTVQLDAAAAAALLNKPVSVLVKQQQQQGQPQLVAPPKQQQPIVLQQNPLPTVLQHAQLSNVRPPQPLKAHVLNREKNLQQQQQQQQLTPTKAQPAVAGHMLITDAAGNQLLQPQIIARHLQQQQHLLVNVPPPSAHSPHSPRIQGQQQQQQPQQHQQQMGAAAPMPQQQQQQQTLVIKQATSAAPPQILHVVSSKASVVPQPQQLPPTSSATGYMQRGNSGYVPPTVLAPATSAQQQQLYKPPNQQKTGPPQGVPVQVQLPLPPHGIPMLPNHPGLLLQQQKAPAHLQPQQHQLTPSPPLAPGKPNPVVHSLQAGQILPGSVGSPPPVSVAAVLKSAQQQANSAAAAAVLRTAIPNISPQGQPRVSPLVLPPGMPGVPPFDTSLHDLGAYVSGRRTQSPPPAHQQASPITPNDSTYRGVAASRDFMLYQHHLMRSGDYDDKMISNSPPLELRRPGSGPPRTIAVPHSLQSPQDRTAADSPQMAQVYVHNARIPHAHFSDMATRAGYYETGGIQLEPPPAHRPAASISVVVPPPPVGASVSPFLGRDGSMQLEDREREMERMSMIAAVVNQQQEQMPAAVLHAGMELAAAQQQAPPPAMAPPPGDSLVTLLQRYPVMWQGLLALKTDQAAVQMHFVHGNPNVARASLPSLAESSTPLLRIAQRMRLEQTQLEGVAKKMQVDKEHCMLLALPCGRDHADVLQHSRNLQTGFITYLQQKMAAGIVNIPIPGSEQAAYVVHIFPACDFANENLERAAPDLKNRVAELAHLLIVIATV
Length6081
PositionKinase
OrganismDrosophila pseudoobscura pseudoobscura (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.02
Grand average of hydropathy-0.905
Instability index69.21
Isoelectric point8.80
Molecular weight650552.75
Publications
PubMed=15632085
PubMed=17994087
PubMed=23185243

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblMetazoa

GO - Biological Function
RNA binding	GO:0003723	IEA:UniProtKB-UniRule

GO - Biological Process
axon guidance	GO:0007411	IEA:EnsemblMetazoa
compound eye development	GO:0048749	IEA:EnsemblMetazoa
defense response to fungus	GO:0050832	IEA:EnsemblMetazoa
epidermal growth factor receptor signaling pathway	GO:0007173	IEA:EnsemblMetazoa
establishment of thoracic bristle planar orientation	GO:0048106	IEA:EnsemblMetazoa
glial cell fate determination	GO:0007403	IEA:EnsemblMetazoa
imaginal disc-derived wing vein morphogenesis	GO:0008586	IEA:EnsemblMetazoa
maintenance of imaginal disc-derived wing hair orientation	GO:0035321	IEA:EnsemblMetazoa
neuroblast fate determination	GO:0007400	IEA:EnsemblMetazoa
peripheral nervous system development	GO:0007422	IEA:EnsemblMetazoa
positive regulation of canonical Wnt signaling pathway	GO:0090263	IEA:EnsemblMetazoa
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblMetazoa
segment specification	GO:0007379	IEA:EnsemblMetazoa
wing disc pattern formation	GO:0035222	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25277
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            14|     687.52|      41|      41|    4312|    4352|       1
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 3894- 3944 (46.86/11.77)	P.............SLEQQ....Q........QQ..QQQ......QKQ..................K.P...P..........TsvmisgssltsssPVK..IEP.............P....TISK...LQQPLV.............Q...........................P
 4191- 4249 (35.17/ 6.52)	Q.............QPHQQ....Q.QP.....SP..KSL......MDL..................H.S...P..........Q.............SSQ..SSQ.............LipmpM.QKMppMQVPHHptiiskvvtvqpqQ...........................A
 4288- 4335 (64.12/19.50)	Q.............QQQQQ....Q.QQ.....QL..SPQmmskmtAAH.................qQ.H...Q..........H.............QQQ..VHQ.............F....MHQQM..LQRQQH.............Q...........................Q
 4336- 4373 (70.84/22.52)	Q.............QQQQQ....Q.QQ.....HL..QQQ......QQH.................gH.P...H..........G.............QQQ..SQQ...................HQQ....QSQLH.............G...........................Q
 4374- 4419 (61.15/18.17)	Q.............QHQLQltpaQ.QH.....QL..QQQ......QQH...................pH...Q.........aP.............QQQ..LTP.............A....QHQHF..QQQQQH.............Q...........................M
 4420- 4458 (58.51/16.99)	N.............QQQQQ....Q.LN.....HQ..QQH.....aQQQ..................Q.H...Q..........Q.............QQQ..LNQ....................QQA..LQAQQL.............H...........................I
 4459- 4525 (50.51/13.40)	Q.............KLQQQ....V.QQ.....HP..PQQ......QQQlgppppmfsqhpprgmpnQ.Q...Q..........Q.............QQL..AHS.....ppckpanpM....VHSPS..LLVRVP.............Q...........................P
 4526- 4575 (53.69/14.83)	Q.............QQQQQ....Q.QS.....SP..GAT......QMQ..................T.H...P..........T.............PQLnvIQS.............P....TAKQP..LIVQQH......ivpppaaQ...........................A
 5266- 5315 (48.15/12.34)	P.............QMQQQ....Q.QP.....HH..QHQ......QQP..................L.P............................QQQ..INAtvlapstaasitaA....MGNKT....VQLD.............A...........................A
 5316- 5374 (36.32/ 7.04)	AaaallnkpvsvlvKQQQQ....QgQP.....QLvaPPK......QQQ....................PivlQ..........Q.............NPL..PTV.............L....QHAQL..SNVRPP.............Q...........................P
 5384- 5416 (40.95/ 9.11)	K.............NLQQQ....Q.Q............Q......QQL..................T.P............................TK...AQP.............A....VAGHM..LITDAA.............G...........................N
 5417- 5457 (44.54/10.72)	Q.............LLQPQ...iI.AR.....HL..Q.Q......QQH.............llvnvP.P...P..........S..................AHS.............P.....HSPR..IQGQQ..............Q...........................Q
 5458- 5539 (34.70/ 6.31)	Q.............QPQQH....Q.QQmgaaaPM..PQQ......QQQ..................Q.Q...TlvikqatsaaP.............PQI..LH..............V....VSSKA..SVVPQP.............QqlpptssatgymqrgnsgyvpptvlapA
 5540- 5584 (42.01/ 9.59)	T.............SAQQQ....Q.LY.....KP..PNQ......QKT..................G.P...P..........Q.........gvpvQVQ..L...............P..lpPHGIP..MLPNHP.............G...........................L
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     646.48|      82|      82|    2056|    2137|       4
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 1846- 1942 (79.56/28.72)	SSSSNAPS..SSSNstSSSNGNSSSATATTTHVQKSQQQQQQNTSEEEHKSktstshssshshsHSHK...KS...SSSAH..SG.............TGTNRS........NSLDKSHSS...nransTD
 1986- 2057 (62.61/20.68)	ATATTTTT..NRSN..STDRSHSSSSSRHNSRSDGGDKKAKKSDKSSVSSS...............TGSSDKR...KNSATSQS.....................................sksatpriED
 2058- 2140 (113.47/44.81)	STDTDDPG..ERSE..KEQRQEREKAHQKERHEREKRKQQEREEKEKERKA.............HHHQPEDKE...KEKAHPERK.............TQTHHQ........EEKEKERKS.......hQE
 2141- 2223 (81.08/29.44)	EKEKERKA..QQQE..EKERDERKAKEEKERKAQEEREQKERDEKEQQRVQ.............EQREQEKREreqREKEHREKE.............HRERDH........REKEKEQSS..........
 2225- 2298 (63.94/21.31)	...........RSI..SDSDQESRMSRMREMSSYHKSKSDASSEAS.SFYA.............HNVTPSAAE...CERQHNKENaadaatvppsscpTPT...................A........HD
 2299- 2374 (74.81/26.47)	GSNANAAAakNRSR..KSSRNSPGPRIHKRRLS.....SQDSNHSGGGGGA........gvgglHNHHDDYVK...RIRMENHQN.............PPTPSQ........NQR................
 2400- 2467 (66.05/22.31)	.CDPNAKTnsSSSH..SKSHGSGGSS................SSSSKHHRR.............EKHHCKSIA...SASAPSSMD.............VVTPSM........DVLETPKAA.......lKQ
 2468- 2528 (69.58/23.99)	QQQQHQLV..NTSE..EE..QQPQPKREKER.DREKDREGHHHHSSSSS.S.............RHKSKRERE...HHREHHREK..............................................
 2596- 2643 (35.39/ 7.77)	..........................................NTSSSKG.................HRDRDRD...REGHHHHHG.............HHHRRRsvdrkssrGSDEGHHSS........KS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     658.75|     101|     101|    4701|    4801|       5
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 3974- 4065 (95.70/28.78)	PMPMP......TPTPTPVIN.......LDLSNVMANCSNSSSSGSP.....S.............ISFGSPT......PSQSIPCM.PQ..A..STPKQTP......tqqlalrtqslimqPPTisIPEQTAHFMV.......P.H.MV
 4066- 4122 (47.87/ 9.46)	LSPHH......PQQQQQQ.........PTTPGPS...................................................................ymmgiraqsphspllspgrgGPP..INRV.VGQLS.......PAGRPV
 4699- 4761 (89.40/26.23)	............................................DP.....REPPPP.....PAVIKEMPPTVAVAVAAPVEVPPT.PTIPT..VTPVSTP....................PPA..ATSAPAPAPA.......PAPILT
 4762- 4859 (114.23/36.27)	VNDHD......TEDETETLQMAPKPSTPTVGRPPGRGGASKRGRQP.....RGAKKQ.....GG.LPLATPGVAAGADAGLGIAPGdNGVQTrlRKPVTAP.........................VTRGRKGRP........PRNLL.
 4860- 4928 (69.30/18.11)	LQQQQlqqqqlAQQQQKAMEMATPTSTPT...P.......................................IAAAVAA...............VTP.STP....................VPT..AAEKKARNQAltqaqasNQDVYE
 4929- 4992 (76.44/21.00)	FNDDS......GEAE.......PKVKIATVVQP................................VEDQRPRLILTIN.....KSQ.PSIRS..STDV.EP....................PAE..AQAQPQPQSL.......SQP..P
 4993- 5079 (81.14/22.90)	TQAHV......HND.............ATISDNSSESSNTRKSRRL...qeKEDRSTvddiiEDVVRNTNTQMAAGISAG.........IGA..QTPPRRS....................GRN..AQTKKTDLVN.......PPTNAV
 5080- 5159 (84.68/24.33)	GRPRR......TKDRKQTISEQPLSS....................lmedsSQSSSS.....PA.....PPATPILHGPEQHAAHM.PQLDT...KEVEPT....................AAT..PSAVPVPVSH.......PAAVPT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     509.96|      79|      81|    3043|    3121|       6
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  882-  940 (47.64/13.56)	...................................................TPTSGGGTPS......ASSAmPAPSIASAiapATATG.....GAS.......GPGAAASTATLPS.VV......GSS........NS..IGS.GL..................
 2950- 3016 (67.33/23.27)	K.......................KHK..KSK..KRLK.............SSSSREVE...............AAQQQQ...Q.........P.........PPSLVVSIATPSIfDV......HSSdlkgnkfvDS..LDDlKME....R.........ERD
 3043- 3121 (125.27/51.83)	R.......................KHKERKEK..KREKM.R..N...L...TAETNTIAGS......ATTA.AAPSHMSS...GSSST.....PAA.......PPAATAAAAAVPV.PS......AGS........ND..LGE.KLE....KL......S.KEE
 3126- 3205 (66.13/22.67)	K.......................KSKKSKSM..DNSST.RlyN...A...ASGNSSLA........ATAA.AAAA.........STA.....PVS.......VP......GPVPV.PAtptsapALS........RDktRGEdKMEfifgII......S.DED
 3206- 3264 (57.54/18.44)	E...................................SQF.A..D...E...QAE....GGT..............KEISS...REPIV.....SAAlqtykqePPST.......PT.PA......HTS........AK..IQE.NQL....PI......SpKED
 3265- 3360 (66.64/22.92)	QppverpprqtggsssssshadreRH..RKE...KREKK.R..R...E...KSQRE..QQQ......QQQQ.AAIQQQSS...SSSAT.....KIE.......DD......NSVDM.DE......AGR.aleaqlmDD..FDS.K......TM......P.EEA
 3361- 3416 (45.06/12.29)	.........................TPSTANT..YRSDM.....tdvF...RFSDNEDNNS......VELK.LKPSSM.....GVPTQ.....PKQ.......PPA...............................................geeqhkS.K.D
 3417- 3482 (34.36/ 7.01)	K.......................KKKKKRSKeeKQEKMlR..R...EsipTPGPGPGPPStpgkltVNVQ.AAAKHAGE...QMDATkhrsaSAS.......PP...........................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     357.73|      70|      70|     425|     494|       7
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  265-  342 (83.23/32.30)	...KSHQHHLHHNNNSSSSGSGSKlnkllkggATGRCGSESPGVGGVGAATTmtmTTTSTITNNSFSNN.SLNNTITTATPT
  343-  385 (50.32/15.49)	MPTIASETSVSACASASPGGAAGA........GAVAEGSAG........SGG...VTSGSGG....................
  425-  494 (117.33/49.71)	SASRPHQRHHHHNHHHNLHGRSTT........SSSRSHSRSPSSYSSSHSSS...SASSQTSSHSHASS.PVQSGIQCADGR
  495-  565 (106.84/44.35)	SISRSLQSVAVNSTSSNPSGNAGA........VAIPSGGCGSSSSSSSSSSS...SSSGSGGGHSSSSClAVNPVVHSEDNR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     355.19|      45|      70|    5591|    5635|       8
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 5591- 5635 (87.12/38.02)	APAHLQ.PQQHQL...........TPSPPLAPGK....................PNPVVHSLQAGQILP.GSVGSPPP
 5638- 5687 (47.63/16.30)	VAAVLK.SAQQQA.nsaaaaavlrTAIPNISP.Q....................GQPRVSPL....VLP.PGMPGVPP
 5695- 5728 (45.35/15.04)	LGAYVS.GRRTQ..............SPPPA............................HQ.QASPITPnDSTYRGVA
 5729- 5767 (35.90/ 9.84)	ASRDFM.LYQHHLmrsgdyddkmiSNSPPLELRR....................P...............GS.G..PP
 5772- 5809 (51.11/18.21)	VPHSLQsPQDRTA...........ADSPQMA........................QVYVHN...ARI.P.HAHFSDMA
 5812- 5842 (43.76/14.17)	A.GYYE.TGGIQL...........EPPPAHRPAA....................SISVV.............V.PPPP
 5843- 5903 (44.32/14.47)	VGASVS.PFLGR............DGSMQLEDREremermsmiaavvnqqqeqmPAAVLH...AGMELA.AAQQQAPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.16|      21|      21|    1788|    1808|       9
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 1676- 1701 (28.76/ 8.32)	PYNS..PSPSPSV.GAATPSGQlsavkpM
 1702- 1722 (26.24/ 6.52)	AGCS..NSSSSSTSSSAAGGGV......V
 1787- 1807 (33.29/11.57)	AAKT..PGPPPAAPNSLTKSLS......V
 1808- 1830 (25.87/ 6.26)	PAEAlpPSQSPSARAQLQKSAS......V
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.71|      22|      64|    1410|    1440|      10
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 1410- 1431 (38.38/ 7.74)	QQQQQQQSSSGASLGLMASPAR
 1475- 1496 (36.33/10.70)	QQQQQQTSSNTNSSHSHSHSHV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     216.67|      38|      39|    3612|    3649|      11
---------------------------------------------------------------------------
 3530- 3560 (31.21/11.96)	ARGSGCD.SLTPS.......REKPRLIspiPK.....T...PTITNS
 3612- 3649 (60.27/33.13)	AAASASA.ESSPTS..AALGKKKDIFI...PGFDGQLD...DRISES
 3650- 3691 (40.96/19.06)	AVQSISA.EFNSASllDPLAGEPKIPVaspPGATKPL....DKIEDS
 3696- 3730 (34.15/14.10)	TISQEET.ESA.VS..ALLGES...F.....GTSSTADyslDGMDES
 3748- 3772 (24.35/ 6.96)	AALAAKAiEGAVEP..PAI.................LE...DEPEAE
 3773- 3796 (25.73/ 7.97)	PEPETEA.E..P............PVV...VGAGGVLD..pDEI...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.72|      14|      16|    1745|    1758|      12
---------------------------------------------------------------------------
 1745- 1758 (28.59/12.22)	ATKGLQYPFPSHPP
 1764- 1777 (30.14/13.48)	APPPAVQPAPPPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.92|      15|      16|    2880|    2894|      13
---------------------------------------------------------------------------
 2880- 2894 (27.01/15.07)	SDGGGEQKKTETEYK
 2899- 2913 (24.91/13.22)	SHSSMEDRKLKTEIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.26|      12|      16|     838|     849|      14
---------------------------------------------------------------------------
  838-  849 (22.36/11.33)	QQNAGSSSRFNR
  855-  866 (21.90/10.91)	QQSRGRASSFSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.17|      16|      16|    2684|    2699|      15
---------------------------------------------------------------------------
 2684- 2699 (27.19/16.91)	KVKARSCKNMQRQAEE
 2701- 2716 (24.98/14.78)	KIKAKFSQLKQSRAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.19|      19|      21|    3812|    3832|      16
---------------------------------------------------------------------------
 3812- 3832 (26.87/19.10)	KADTpqSERDLQIDTDTEENE
 3836- 3854 (31.31/15.37)	EADS..SGPSLKIDETVQSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.79|      16|      17|    2840|    2855|      17
---------------------------------------------------------------------------
 2840- 2855 (29.28/15.77)	ESQSQPGAP...EMEVQIK
 2857- 2875 (25.52/12.33)	EPQPQPEMEmelELEPEIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     218.09|      47|     158|    1363|    1409|      18
---------------------------------------------------------------------------
 1157- 1200 (46.74/17.65)	................SCRRPS..IDAGAFAALSSSSAfRHGLTgaSGMEQQQQ.QQHMMNAS
 1205- 1264 (60.37/25.99)	RRRVAPmqqpptmgnnSSSGGGllLGGGVTGVTPPNDE.AYHHH..VSRGRGHQlHSHHSHEA
 1265- 1307 (43.88/15.89)	SGGESA.........dGSRPGT.pLCDERPEVLPSEPR.RLPPP..RERTRERV.RE......
 1363- 1403 (67.10/30.12)	................SSLSAG..LGSGSSAFLPSPSS.RYWRS..SSHQHQHQ.HQHHSHHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.41|      29|      90|    4162|    4190|      19
---------------------------------------------------------------------------
 4162- 4190 (60.39/22.21)	TTSPTTSKP..NSYQPRGQQQPH...QQQQPHQQ
 4250- 4283 (45.03/14.25)	TQSQVASSPplGSLPPLGHKSLHvnaQPQPPHHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.43|      17|      88|    1640|    1656|      20
---------------------------------------------------------------------------
 1640- 1656 (29.49/15.98)	TPVLSNSSTSSKTTTSG
 1728- 1744 (27.94/14.56)	TVVAAASSSASPAATSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.46|      20|      89|    3865|    3884|      21
---------------------------------------------------------------------------
 3865- 3884 (33.61/12.51)	SSREAAASKASPVADPPSKK
 3953- 3972 (37.85/15.30)	SAMPPAPAKAAPAPAPAPHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.66|      20|      23|    2741|    2762|      22
---------------------------------------------------------------------------
 2741- 2762 (27.95/22.74)	SSFHGRhIgLSSSDDDNDDDED
 2767- 2786 (37.72/20.37)	SHSHSR.I.FSDSDARSEGCED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.46|      18|      18|     679|     696|      23
---------------------------------------------------------------------------
  679-  696 (29.17/24.07)	EITASELRVH.FESFGEII
  699-  717 (27.29/21.87)	DIKKQGLNAYaFCQYSDIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.32|      21|     157|    2564|    2584|      25
---------------------------------------------------------------------------
 2540- 2560 (37.15/19.21)	DEEQQQHQHMHAHSHLQLQQQ
 2564- 2584 (39.18/20.83)	DQEQDQEHHHNPHRRTSAAGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.77|      30|      69|    5162|    5191|      31
---------------------------------------------------------------------------
 5162- 5191 (53.79/26.94)	VVP..VMPVHPTKPTIPQHPKKK...AI..AAAEIES
 5198- 5226 (31.44/11.90)	SIPsgGLPMHQTAA.....PATQ...KItgGAADAVS
 5230- 5260 (41.54/18.70)	VDP..VTGV..ITAGMPQGKEGNlpaAT..AAAPTNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.00|      53|      70|    4567|    4624|      34
---------------------------------------------------------------------------
 4567- 4624 (78.86/54.27)	IVPPPAAqaptTAANAKIHYPTQQN...VNPSP...NLIKETPVEAsGSASLANKTSESVSVIR
 4638- 4696 (76.13/44.28)	IISPKAS....SATAGGTSLLTEENlikISSQPkqdELIEQDSKEV.DSDYWSAKEVNIDSVIK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25277 with Med12 domain of Kingdom Metazoa
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