<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25276

Description Uncharacterized protein
SequenceMATKQEEQANLSDVLTPSMSLTELEMKFADETDGKAKDVVQARIKKAEDGILPLRLQFNDFTQIMSSLDEERYANVSKQEKFQMIRSKVLGLTERLQELSNDFEELQPLFATVGEYSKTYKNKNFQVLENLASYNHRGKAGASISNSTPTPAAATPTTAPTPGAGTKKAAKTAPTPTATATIGTPSNNAPTPATTATTPGTQAKKPRKPRQTKKQQQAAAAAAAVAQAQAQAQAQAQNQNQNNMQNKNISNPGMNSNMGTPVMGNPNMKQMQSPIPANAMNNMNVPHNGAMRPSVPNGNMGNPSMGNLNMNAPNMGNPNMNNPNMNNPNAMMSPMAGQGQLNQMFPMQNHNQNGHFMGQQSPGPNIGQMQFPPNNGNMNGMPGTSDMNLGMNPSMNMNMGMNMNQITPANILSMNTKGKDDQMQNIGMDQNQNQNQNQNQNQSMNMNMNNDSNNPKSAYDLVDFNSLDLSSLNMDFL
Length477
PositionTail
OrganismCandida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (Yeast) (Torulopsis glabrata)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Nakaseomyces> Nakaseomyces/Candida clade.
Aromaticity0.04
Grand average of hydropathy-0.867
Instability index36.27
Isoelectric point8.84
Molecular weight51680.42
Publications
PubMed=15229592

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25276
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.36|      21|      22|     293|     313|       1
---------------------------------------------------------------------------
  251-  269 (34.94/ 9.00)	NP........GMNSNMGTPVMGNPNMK
  285-  311 (35.98/ 9.50)	VPhngamrPSVPNGNMGNPSMGNLNMN
  430-  449 (29.45/ 6.36)	QN.....qNQNQNQNQ.NQSM.NMNMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.66|      19|      22|     347|     367|       2
---------------------------------------------------------------------------
  348-  369 (32.17/12.88)	QNHNQNGHFMGQqsPGP...NIGqM
  370-  391 (31.49/ 8.43)	QFPPNNGNMNGM..PGTsdmNLG.M
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.75|      27|      40|     145|     182|       3
---------------------------------------------------------------------------
  145-  175 (45.93/36.26)	SNSTPTPAaatpTTAPTPGAGTKKAAKTAPT
  186-  212 (52.82/20.91)	SNNAPTPA....TTATTPGTQAKKPRKPRQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.26|      32|      40|      45|      83|       4
---------------------------------------------------------------------------
   45-   83 (44.18/48.40)	KKAEDgilplRLQ..FNDFTQI...MSSLDEerYANVSKQEKFQ
   90-  126 (45.08/29.77)	LGLTE.....RLQelSNDFEELqplFATVGE..YSKTYKNKNFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.83|      27|      76|     317|     344|       6
---------------------------------------------------------------------------
  317-  344 (52.17/20.85)	NPNMN...NPNMNN..PNAMMSpMAGQGQLNQM
  392-  423 (42.66/12.84)	NPSMNmnmGMNMNQitPANILS.MNTKGKDDQM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25276 with Med3 domain of Kingdom Fungi
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