<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25264

Description GD19328
SequenceMEVDQIPLADVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAANLLEPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLDQTSVQRHCILICNSPPYQMPTTESWKYPGKSCEQLAALFNERKINLSIIAPRKMPVLFKLFMKADGDQPITSKNYAKNIRHLVLLKGYSLKERAPSPNSMAAQMAAPNAAQATVQQQQQQQQNQAGQQQQGQGMPMDTTPAQQQQQQQQQQQQQQGNPQQQVMNMNTMQQQQPGPNPPAGLLNPQQQQQLLQQQQQNQFVSNQMQNPNFQQNVGPGQNRWMYPNQPGQARPPFMQGAGNVGGVGQGGGMQQNPNSALISRINAPPNQTVTSLQQQQQQQAQQQQQQQAQQQQQQRMQMLSQQQMLNHQQLQQQQQLAQQQQQQQQGQQQQQGNPNAGNNMMPASNAGNMLIRSSSNNKWDSSLIPSSKSIRSSNSREIHSRSRPL
Length515
PositionUnknown
OrganismDrosophila simulans (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.05
Grand average of hydropathy-0.860
Instability index67.52
Isoelectric point8.97
Molecular weight57674.00
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
nervous system development	GO:0007399	IEA:EnsemblMetazoa
positive regulation of antibacterial peptide biosynthetic process	GO:0006963	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25264
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     241.37|      42|      43|     257|     299|       1
---------------------------------------------------------------------------
  256-  294 (80.71/19.04)	...G...QQQQGQGMPMDTTPAQQQQQ..QQQQQQQ....QQGN...P..Q..QQV.......M......N
  296-  352 (63.70/14.34)	NTMQ...QQQPGPNPPAGLLNPQQQQQllQQQQQNQfvsnQMQN...PnfQ..QNVgpgqnrwM......Y
  400-  433 (50.47/ 7.67)	TSLQ...QQQQ.Q.......QAQQQQQ..QQAQQQQ....QQRMqmlS..Q..QQ................
  434-  478 (46.49/ 7.67)	..MLnhqQLQQQQQL......AQQQQQ..QQQGQQQ....QQGN...P..NagNNM.......MpasnagN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     251.22|      80|     114|      32|     114|       2
---------------------------------------------------------------------------
   32-  114 (131.51/99.44)	YILPTLE..HFTTGSIDEREYLIAERFATLyGIVVYRTAANLLEPVCSTYGPflQP...QKVMETIERLPLVGG.GME....SCAHMAEGFAA
  147-  236 (119.71/79.53)	YQMPTTEswKYPGKSCEQLAALFNERKINL.SIIAPRKMPVLFKLFMKADGD..QPitsKNYAKNIRHLVLLKGySLKerapSPNSMAAQMAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25264 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KGYSLKERAPSPNSMAAQMAAPNAAQATVQQQQQQQQNQAGQQQQGQGMPMDTTPAQQQQQQQQQQQQQQGNPQQQVMNMNTMQQQQPGPNPPAGLLNPQQQQQLLQQQQQNQFVSNQMQNPNFQQNVGPGQNRWMYPNQPGQARPPFMQGAGNVGGVGQGGGMQQNPNSALISRINAPPNQTVTSLQQQQQQQAQQQQQQQAQQQQQQRMQMLSQQQMLNHQQLQQQQQLAQQQQQQQQGQQQQQGNPNAGNNMMPASNAGNMLIRSSSNNKWDSSLIPSSKSIRSSNSREIHSRSRPL
216
515










Molecular Recognition Features






MoRF SequenceStartStop




NANANA