<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25250
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MHHPRIGEGFISPSEAVICWLLNQSINLWVLHYYATVPSEDIIEAQFFHNGKGVIFNALKKDHTYYAEKFERVEQQRPTLSGFGGVASEGCVLLTSSGLLAAFSLPAIQKTSAAGGTADGPAHEVVELTPALHSIGISRSFIEHCSMTPSPSGALSIAFSCGWQQQLVQCFKVSLSLEGELGLEQHLAIKSESQTSIFLGPLDGRRISHLKWTRIANEDVIFIAYACPDGAGSQLEQWTLTRRHQSVHALLQGGGGANNKPNEFVQSESWEQVGKVQLNASLADISVTRLSVSTPDFCQVYAILQDNSVQVLEPNSMKQLNHTQFDKLSGTSGGIKFVSGDLTPSSQMLLIFDSHAQLYAMQAPLLKQGGSGLLLLEYCIVTGCDASDVLLLNLGNLEALVEKLTDNFTRQPSFVRHFYYANFLALKSNICRVQQQEFDNLIILHAISTTFKSLLRPSDLGFQDKGPADNLAIKLAESIPDVDTVMLNLDAKDFTVEPVMLQSLQQLIQWVTDLALNMLHRLPEEVMKTKLSGKRPSYDISRDIVAISSLRELLVMIRIWGLLNTQCLPVYTKTMDNIDVLVILFRLLTRLAQNPAEPDEMLLDECSLLSKQLLIPQPTKFNPTTLLSAQGFAAVKSGQLQFTSLEEPTCLQDMETEEVVFASSVKDGVSNLQLGARPSHIRRCARCGFVFVNNASKVAKTSALKAWFSKWLHCHCGGFWKQVH |
Length | 724 |
Position | Tail |
Organism | Drosophila simulans (Fruit fly) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota>
Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea>
Drosophilidae> Drosophila> Sophophora.
|
Aromaticity | 0.08 |
Grand average of hydropathy | 0.013 |
Instability index | 46.79 |
Isoelectric point | 5.97 |
Molecular weight | 79933.85 |
Publications | PubMed=17994087
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:EnsemblMetazoa
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:EnsemblMetazoa
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:EnsemblMetazoa
response to heat GO:0009408 IEA:EnsemblMetazoa
response to lipopolysaccharide GO:0032496 IEA:EnsemblMetazoa
|
Interaction
Repeat regions
Repeats |
>MDP25250
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.54| 16| 27| 612| 638| 1
---------------------------------------------------------------------------
598- 613 (26.11/11.23) PDEMLLDECSLL.........SKQL
616- 640 (22.43/35.77) PQPTKFNPTTLLsaqgfaavkSGQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 56.52| 14| 27| 674| 688| 2
---------------------------------------------------------------------------
674- 688 (24.59/21.55) LGARPSHIRRCaRCG
704- 717 (31.93/22.94) LKAWFSKWLHC.HCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 369.60| 119| 190| 276| 407| 3
---------------------------------------------------------------------------
110- 155 (31.78/10.72) ................................................................KTSaagGTADGPAHEVVELTPALHSIGISRSFIEHCSM.TP....SPSGAL....................................
276- 407 (179.23/139.24) VQLNASLADISVTRLSVSTPDFCQVYAILQ..DNSVQV...........LEPNSMKqlnhtqfDKLS...GTSGGIKFVSGDLTPSSQMLLIFDSHAQLYAMqAPlLKQGGSGLLLLEYCI...VTGCDASDVLLLnlgnLEALVEKLTDN
473- 594 (158.60/96.06) IKLAESIPDVDTVMLNLDAKDFTVEPVMLQslQQLIQWvtdlalnmlhrLPEEVMK.......TKLS...G.....KRPSYDI...SRDIVAISSLRELLVM....IRIWG...LLNTQCLpvyTKTMDNIDVLVI....LFRLLTRLAQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.23| 11| 23| 203| 213| 4
---------------------------------------------------------------------------
203- 213 (21.34/14.48) DGRRISHLKWT
229- 239 (20.90/14.02) DGAGSQLEQWT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.47| 14| 352| 63| 76| 6
---------------------------------------------------------------------------
63- 76 (27.41/19.19) HTYYAE......KFERVEQQ
417- 436 (23.06/15.09) HFYYANflalksNICRVQQQ
---------------------------------------------------------------------------
|