<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25248

Description GD24188
SequenceMASSPTPSLDSMRGGANSIESYEHAGYLSDSPLTLSGSSPPASDSAICSDEYTGGSSVKSRSDVTVINGHHPISASVSSSSSASSSSCSSSSSSSSSSSSSSSSTSGLSGCGSTSSSVISANNVASSNGPGVIGSNLQSSNNGGNSGISSLVVGAGKGSNSSSNSSSSNTSANGSPPRCTACKSKCSDAVAKCFDCQSYLCANCVTAHEFMHCFNGHNVCLIKGFEASTTGTPLSVGSPSNNPASNEFKYASSLTMMLQQQQQQLDSQQQQQQQQQLLPAQPMSQLSKIVLAAAAQANSQEQQREDSIYGSLHSQQQQQQQQQQRQLFCPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQSPGMTTSTGSTANESALQTLLADMRGKIGEIVGIAGNSDQNLTKVKLQYQKAHNELNETHQFFASMLDERKTELLKELETLYTAKVNSNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLADALLLRKSLEQQLQTGIQEMQLPFEIEFMSNYQSIQAGVRNTFGYIRANSSDGDLLA
Length547
PositionTail
OrganismDrosophila simulans (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.04
Grand average of hydropathy-0.459
Instability index61.53
Isoelectric point5.76
Molecular weight57890.14
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25248
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.33|      12|      49|     265|     276|       1
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  265-  276 (24.88/13.33)	LDSQQQQQQQQQ
  312-  323 (25.45/13.79)	LHSQQQQQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     110.90|      21|      21|      74|      94|       2
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   13-   33 (23.53/ 6.53)	RGGANSIESYEHAGYLSDSPL
   34-   54 (25.15/ 7.58)	TLSGSSPPASDSAICSDEYTG
   74-   94 (31.39/11.57)	SASVSSSSSASSSSCSSSSSS
   97-  117 (30.84/11.22)	SSSSSSSSTSGLSGCGSTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.13|      13|      17|     182|     197|       3
---------------------------------------------------------------------------
  182-  195 (21.67/19.38)	CkSKCSDA..VAKCFD
  201-  215 (23.46/ 8.30)	C.ANCVTAheFMHCFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.44|      26|     135|     383|     410|       5
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  383-  410 (39.11/34.75)	SALQTLLADMRGKIGEIVgiAGNSDQNL
  520-  545 (46.33/33.48)	SNYQSIQAGVRNTFGYIR..ANSSDGDL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      15.22|       9|     135|     146|     175|       6
---------------------------------------------------------------------------
  120-  136 ( 9.38/ 7.89)	SANnvassngpG....VI....GSN
  144-  160 ( 5.84/18.77)	GNS........GisslVVgagkGSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.00|      17|     103|      56|      72|       8
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   56-   72 (31.30/14.84)	SSVKSRSDVTVINGHHP
  161-  177 (30.70/14.42)	SSSNSSSSNTSANGSPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25248 with Med15 domain of Kingdom Metazoa
Unable to open file!