<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25213
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MTILYKVESKEFSKDSVYPHKVVLCSVSPRNIVAFSVLQSVGVANTDAALGDSEDSTTGTSTGNSHVYVCDIVTPWEHFKVCSSRSLISVLEWSPNGEQLLLGFMGGRLEIWQPRNQNINLWQLQFYAILPSEDIIAAKFFHNAKEFLFNPQKKDHTYYTDKFERLEQRPTLCGFGGVAGEGGIMLTSSGLLAAFTLPIVQAGNDSSFGITPAEKLPLITHSLGISRSYIEHCTMQHRLAGGLHVAFTCGWQQQLVQCYHILLSLDGDLGLEQHLALKSESQACIFLNPLEGKQIRSLKRARIAQEEIIFIVYDCPDGGGLIEQWSLTHRQHTVHALLQQGGGPGKPNDFVHTESWEQKAKIHLNARVADLCVSRLITNSLECSQVYAILQDSTVHILEANTLKQLSLTQFDRPVESSSEVKFTSGDLTPTSQMLLIFDSHAQLHAMQTPLLKQGGAGFLLLLLEYCIISGLDASDVLLLNHSAGVNLLDSLVEKLTDNFTRQPSYVRHFYYANFLALKSHLCRVQQQQQQQQQTQQPGQEQEFNNLIILHAISTTFKSLLRPSDLGCQDKGPADNLAMKLAESIPDVDTVMLNLDAKDFTVEPMMLQSLQQLIQWVTDLALNMLHRLPEEVMKCKLSGKRPSYDISRDIVAIGSLRELLVMIRIWGLLKTECLPIYTKTMDNIDVLAVLFRLLTRLAQNTAEPDDMLLDECSLLSKQLLIPQNIKFTPTTLLSAQGLAALRASSHPLMFSSLVEPASLQDIEMEEVVFARSIKDGVSNLQLGSHPNTIRRCARCGFVFVNSASKVAKTSALKAWFNKWLHCHCGGFWKQIN |
Length | 832 |
Position | Tail |
Organism | Drosophila willistoni (Fruit fly) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota>
Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea>
Drosophilidae> Drosophila> Sophophora.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.042 |
Instability index | 48.91 |
Isoelectric point | 6.16 |
Molecular weight | 92800.69 |
Publications | PubMed=17994087
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP25213
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 272.92| 85| 111| 258| 342| 1
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230- 286 (60.13/30.32) ...................................IEHCTMQHRlA.GGLHV.AFTCGW.......................qqqlvqCYHILLSLD.GDLGLEQHLALKSESQACIF
287- 398 (122.51/68.87) LNPLEGKQIRSLKRARIAQEEIIFIVYDCPDGGGLIEQWSLTHR.Q.HTVHA.LLQQGGgpgkpndfvhtesweqkakihlnarvadlCVSRLIT...NSLECSQVYAILQDSTVHIL
400- 484 (90.28/48.95) ANTLKQLSLTQFDRPVESSSEVKFTSGDLTPTSQMLLIFD.SHA.QlHAMQTpLLKQGG.....................agflllllEYCIISGLDaSDVLLLNHSA..........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.75| 12| 36| 736| 747| 2
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736- 747 (21.30/12.98) QGLAALRASSHP
775- 786 (22.45/14.08) DGVSNLQLGSHP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.85| 21| 54| 15| 39| 4
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15- 39 (29.00/30.56) DSVYP.HKVVLCsvSPRNIVafSVLQ
71- 92 (32.85/20.07) DIVTPwEHFKVC..SSRSLI..SVLE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 94.05| 27| 619| 168| 195| 6
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168- 195 (44.51/33.07) QRPTLCGFGGVAGEGGIMLTSSgLLAAF
790- 816 (49.54/31.83) RRCARCGFVFVNSASKVAKTSA.LKAWF
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