<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25187

Description Uncharacterized protein
SequenceMDTQILDAVNDFLKVDSIDEAFVSVILFKSEDDKASNFTNNLITAFGNVENREQVLRSYLLRAAEAPSYHMQVLMGALPKLVDAHLITARMLCDKVLSCEKLDYERKTFWIESFRLIKKVIAHVDYKGVREIMKACRDKAQWFPLNVNVTYLPQLLAVEEIIRFIFDRNNCLLPAYFIANEIMRPFPYHWKLNKLMTDFVEEFRATAQMVSIIGHANMLPIVEHFGYADHLMNSWRLDHNTLKFNFKGSLPYEPELLEDQTPLLRYVLEQPYSREMVSVMLNLQKHQKQRYNALEEQLVNLIIHAMEMTESNDATAGSGFNATDEQISPNEWVWLHLSSQLIYFVLFQFVSFMHIVLALHEKLSKLELRKGRDQLMWILLQFISGSIQKNPITNFLPVFRLFDLLYPEQEPLKLPDYNKSSLVRHMAPICIWIHLMKKARVENMNITRPLPIALKNHQDFLQHLVAPNSMMNVTLGNDFRIILICNAYSTNQEYFARHMNVLLDAMNGNAKSANGTPIPAVTYSVSVLDSLTVHSKMSLIHSFVTQMLKQAQSKTLVPAPALIETYARLLVYTEIESLGIKGFLTQLLPTVFKNQAWAMLHTLMEMFSYRLHHVPTHYRVQLLSLLYTLSSVPPTNKMQLNLCFESTALRLITSIGSAEFQSQFSRYLNDKSPGGVASNESEELNRVLILTLARSMHVHGGGDELAGWCKDFLSNIMQHTPHSWPMQSLACFPPALNEYFTQNNHPAENKQQLKKSVEEEYRNWTSMSNENDIIAHFIRPNTNPLFLCLLFKIIWETESISPVAYKILEGISARALSTHLRKFCDYLVAEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRLVLCLALRTHEGNEAQVCLIIIQLLLLKASELRNRVQEFCKDNNPDHWKQSNWHEKHLQFHQNYPEKFAPDESASQIPLPVYFSNVCLRFLPVLDVVVHRFIELTIPNVHQILGIILDHLSILYKFHDRPITYLYNTLHYYERILRDRLPLKKKLVSTITSAFSEIRPANWSVSEPYKVYLQSQDALWTPELSYYMNLIRRLADTISGKNVFYTTDWRFNEFPNAPTHALYVTCVELLGLPLAPSVVAGNIIDVIVNGYAVVPQKEIHSYINAVGIVLAALPEPYWSAIYDRLQDMLNTPNMLNWTYRFNAFELFNFKTVREAMLEKSYAVVLAVAHAVFHHMGAFKLAAMTRYIKEKLKPCVRTEHQLLYLCHVFGPFLQRIEQEKPNAVAGIAIFLYEMLENVDKQHGPKPLEYMDQICDFLYHIKYIHVGNIIKNESEAIIKRLRPQLQMRLRFITHLNLEDIHTEKIADSNANTTANANHSPLQAQQQQQAQAQAVAATTTSLPLGT
Length1373
PositionTail
OrganismDrosophila virilis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.10
Grand average of hydropathy-0.081
Instability index39.94
Isoelectric point6.87
Molecular weight158368.54
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25187
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.38|      13|      15|     609|     623|       1
---------------------------------------------------------------------------
  609-  621 (26.11/16.57)	YRLHHVPTHYRVQ
  627-  639 (24.27/ 8.69)	YTLSSVPPTNKMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.03|      15|      15|    1074|    1088|       2
---------------------------------------------------------------------------
 1074- 1088 (31.11/18.85)	FYTTDWRFNEFPNAP
 1092- 1106 (26.92/15.32)	LYVTCVELLGLPLAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.66|      13|      20|     152|     170|       3
---------------------------------------------------------------------------
  152-  164 (22.43/28.73)	LPQLLAVEEIIR.F
  173-  186 (20.23/ 6.09)	LPAYFIANEIMRpF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     245.49|      80|     598|     325|     413|       4
---------------------------------------------------------------------------
  325-  413 (119.54/104.97)	EQISPNEwvwlhLSSQL...IYF..VLFQFVSFMHIVLalHeKLSKLELRKGRdQLMWILLQFIS..GSIQKNPITNFLPVFRLFDLLYPEQEPLK
  928- 1014 (125.95/81.55)	EKFAPDE.....SASQIplpVYFsnVCLRFLPVLDVVV..H.RFIELTIPNVH.QILGIILDHLSilYKFHDRPITYLYNTLHYYERILRDRLPLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.96|      79|     528|     694|     780|       6
---------------------------------------------------------------------------
  694-  780 (134.08/105.78)	RSMHvhgggdELAGWCK...DFLSNIMQHTPHSwpMQSLACFPPALNEYFTQNN..HPAENKQQLKKSVEE.EYRNWTS.MSNENDIIAHFIRP
 1226- 1311 (120.88/75.73)	RTEH......QLLYLCHvfgPFLQRIEQEKPNA..VAGIAIFLYEMLENVDKQHgpKPLEYMDQICDFLYHiKYIHVGNiIKNESEAIIKRLRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.47|      13|      16|      54|      66|       8
---------------------------------------------------------------------------
   54-   66 (20.74/13.45)	QVLRSYLLRAAEA
   72-   84 (21.73/14.47)	QVLMGALPKLVDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.07|      14|      16|     815|     828|       9
---------------------------------------------------------------------------
  815-  828 (25.35/15.58)	ALSTHLRKFCDYLV
  832-  845 (25.72/15.91)	ASSSDGRDFIHKCV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25187 with Med23 domain of Kingdom Metazoa
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