<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25172

Description Trap100
SequenceMKDNKILQLINVAWRERWTDSQWGINIKKVLPRGVSGDVYNLAECLLQQAVIGSTANSLVLNYLKHSLCAHLVSHAAVLRCIAKYDKLNRVYCVTALLEFLVSIIDGITCRIKSEEALLPGAVVQLVMWVMQIFSRTLQQYEMRGELSAELSYMLDQSCLLIEHLTQQQFVLAMLNVGCHEEPESLDRLHDLYASIKASLTNSNFTLSAATAEQQLKQLAYIDAKHLDLQMLSPNPCLEKISCCVQPLLAVEVLLNPCKDTSYYVAELQMLQRLKGYTNTRLFYEIIRAGFLTLSNVADTSPDTMWGAFMFFKMPHIIKQLHALQRVPGEQQLAATDYIPELVEALELLIEDNLLLDFMDTKCSCNIIEFLLNDWTKQQLVNEVHVKKFASQREAASLLLKKCDNGQQKPSNINFIKRAEVPLSGVLKTLCTNKMQDMVNVLCHVPVGHSFELILSVATVEGRLKTFVSRLIQCNENSKQVPGELGKQCITRSTLFDVSFLMLTSIVQTYGSDVVLSERCDSFFEKWVRTCMMERNKLKNPRQILALCEDSIVDELLLSLSKPEAAQLKPSNLTWQDICLNLPGVLHHVLIAWEQETLSSADVKSILDNMKRRLFSFSVCATSYLCAYMYSVRETELLKPLNMIQQFLAPLTTEELSSQENSKERLALSYQIIRKMQHDVHPAPNTKSRLISHTPLIEQFRECWRIVSEAGHLPVRAAQTLESLLLAGGASWLVTQLVEQLLSCKYMRDMAKCMDIVFAVMHLDIERTTEALLQYVVAPLVLRRQGEDINEPQSLVLARLSVYCIISCLETRSSSSAAASTLQKRSRSHDDDEMTGVANAAKVRKVIGDGSDNSNDFADGDAANVVALLSAPSAELRVTPANLKEPLQASIKHIFRVFVQFVSGDELSPKAVFVYQFISLLVECGGERVTPVLRLLPPNLMQRLLKVLATDDIRVGLISRLYDLRLHTGRQAAVADLCLWRNMQLARNSIHL
Length992
PositionTail
OrganismDrosophila mojavensis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.07
Grand average of hydropathy0.053
Instability index45.51
Isoelectric point6.47
Molecular weight111738.80
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblMetazoa

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:EnsemblMetazoa

GO - Biological Process
ecdysone-mediated induction of salivary gland cell autophagic cell death	GO:0035072	IEA:EnsemblMetazoa
pupal development	GO:0035209	IEA:EnsemblMetazoa
regulation of transcription by RNA polymerase II	GO:0006357	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25172
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.57|      35|     193|     700|     756|       1
---------------------------------------------------------------------------
  110-  144 (63.49/31.07)	C.RIKSEEALLPGAVVQLVM.........W.VMQIFSRTLQQYEMR
  703-  748 (47.08/58.89)	CwRIVSEAGHLPVRAAQTLEslllaggasWlVTQLVEQLLSCKYMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.66|      16|      19|     892|     909|       2
---------------------------------------------------------------------------
  892-  909 (22.32/23.15)	KHIFrVFvQFVS......GDELSP
  910-  931 (23.34/13.55)	KAVF.VY.QFISllvecgGERVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.81|      13|      19|     235|     248|       3
---------------------------------------------------------------------------
  235-  248 (23.31/17.52)	NPClEKISCCVQPL
  256-  268 (25.50/14.39)	NPC.KDTSYYVAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.29|      52|     100|     407|     465|       7
---------------------------------------------------------------------------
  407-  431 (21.45/ 9.25)	..............................................................................QQKPSNINFIKRAEVPLSGVLKTlC
  432-  531 (61.35/43.53)	TNKMQD..MVNVLCHVPVGHsfELILSVATVEgrlktfvsrliqcnenskqvpgelgkqcitrstlfdvsflmltsivQTYGSDVVLSERCDSFFEKWVRT.C
  535-  586 (65.50/34.74)	RNKLKNprQILALCEDSIVD..ELLLSLSKPE............................................aaQLKPSNLTW.QDICLNLPGVL....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.14|      19|     307|     637|     656|       9
---------------------------------------------------------------------------
  637-  656 (29.15/22.48)	LLKPlNMIQQFLAPLTTEEL
  935-  953 (32.99/20.70)	LLPP.NLMQRLLKVLATDDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.55|      30|     608|     181|     211|      11
---------------------------------------------------------------------------
  181-  211 (45.53/34.43)	EEPES..LDRLhDLYASIKASLTNSNFTLSAAT
  790-  821 (47.02/30.12)	NEPQSlvLARL.SVYCIISCLETRSSSSAAAST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25172 with Med24 domain of Kingdom Metazoa
Unable to open file!