<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25162

Description Uncharacterized protein
SequenceMWQLFHVSVEMWKYGQNQMNQGASGGGGPNMMPMGGFMQGGAGMHMSPQQQQQHQMNQMMGSGGPGGPGGMQMNPNAGGGNGPAGLMQGMGMSPQHQMQQQHQMMQGGVGVPMSNMPQQQSNVMQQQMMGPQQGVGMGGSGGVGPQQQQPNIPQQQQQQHNPGTGAAGGGGGNNMLAISQPNPHKEINIVQLSRLGQETVQDIASRFQEVFSALKNIQPTSHRDNNTEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYMNAETLIPYKDEPDPRIEPSQCDEYRKVLQENQELIETVKLKNRQLREIIDRTRIIIWEINTMLAMRRS
Length328
PositionHead
OrganismDrosophila mojavensis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.05
Grand average of hydropathy-0.799
Instability index61.38
Isoelectric point8.52
Molecular weight36360.98
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblMetazoa

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:EnsemblMetazoa

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25162
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     158.52|      25|      25|      94|     118|       1
---------------------------------------------------------------------------
   52-   71 (37.54/ 9.07)	QQHQMNQM..MG..SGGPGGP.GG..M..
   72-   92 (30.66/ 6.05)	...QMNPNAGGG..NGPAGL.MQG..MGM
   94-  118 (56.72/17.46)	PQHQMQQQHQMM..QGGVGVPMSN..MPQ
  120-  146 (33.60/ 7.34)	QSNVMQQQ..MMgpQQGVGMGGSGgvGPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.92|      20|      27|     188|     214|       2
---------------------------------------------------------------------------
  188-  211 (27.82/37.35)	NIVQLSRLGQETvqdiASRFQEVF
  216-  235 (36.10/23.24)	NIQPTSHRDNNT....EKKVQEYF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.30|      17|     141|      16|      32|       4
---------------------------------------------------------------------------
   16-   32 (36.84/13.74)	QNQMNQG...ASGGGGPNMM
  157-  176 (31.46/10.78)	QQQHNPGtgaAGGGGGNNML
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25162 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQNQMNQGASGGGGPNMMPMGGFMQGGAGMHMSPQQQQQHQMNQMMGSGGPGGPGGMQMNPNAGGGNGPAGLMQGMGMSPQHQMQQQHQMMQGGVGVPMSNMPQQQSNVMQQQMMGPQQGVGMGGSGGVGPQQQQPNIPQQQQQQHNPGTGAAGGGGGNNMLAISQPNPHKEINIVQLSR
15
194










Molecular Recognition Features






MoRF SequenceStartStop




NANANA