<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25126

Description GH11923
SequenceMKNLLMPLNGASGEPSTTSCNFHKDALLGFALDLPDEQLDSAVIQLQAAAAEQQQQNNINNNNSSNNNSNNSCNSGDFHPSLLNCVDLLPPAVPATDLPECYTFDAEAAATELVNVANKDCDSLARLAYNLYRLAKEDHIVIDRKRNEVIRTDALTNQKTIYRCMDPIGMGMYPANCSRSSSSFKVSRARKRTATADISGIAPTVAIGRKTNEPVSALNADSMPRTRSGRIIRPPLPQAATAPVATEAAAPNSSQMLEMLVAELRDKDYRAPAAAHTPDLPAAEAYKERAVPPNAICPGCNKIFLGRRMQRHYVKYPEHMPSAIAVQHQHQQQQQLQQEQQQQQQQQQHQQQQHQQQQHQQQQQQQHQQQQQQQQQQQQQQQLPQQQQQQQLNVPTLFGLLTAQLQRHSHLSEEQRADLFLHELTDFVEQLQLRSTRLIRNTSGVHFVNARIARVLGIPEGQYALDMSAMESAQAPTPEPELQQSLHSSAVSSCARNMVDYPGLSMSLDDTLTDEAAQRLNLSAGGKLLPPSEESLLRNVSDLMQPPVAVAQPTVDHGAGAMLPHYDHASDNAVEALSMKETPNAAILDLNVDYFKFNN
Length599
PositionTail
OrganismDrosophila grimshawi (Hawaiian fruit fly) (Idiomyia grimshawi)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Hawaiian Drosophila.
Aromaticity0.04
Grand average of hydropathy-0.645
Instability index65.67
Isoelectric point5.79
Molecular weight66393.41
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25126
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.82|      17|      17|     342|     358|       1
---------------------------------------------------------------------------
  342-  358 (40.28/15.94)	QQQQQQQHQQQQHQQQQ
  360-  376 (40.66/16.16)	QQQQQQQHQQQQQQQQQ
  377-  391 (28.88/ 9.52)	QQQQQQLPQQQQQQQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.99|      17|      45|     234|     252|       2
---------------------------------------------------------------------------
  234-  251 (27.50/20.80)	PPLPqAATA....PVATEAAAP
  278-  298 (28.50/11.60)	PDLP.AAEAykerAVPPNAICP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.49|      25|      54|       9|      35|       3
---------------------------------------------------------------------------
    9-   35 (39.42/24.79)	NGASGEPSTTSCN...FHkDALLGfALDL.P
   62-   90 (41.07/18.40)	NNSSNNNSNNSCNsgdFH.PSLLN.CVDLlP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.08|      15|      44|     403|     417|       4
---------------------------------------------------------------------------
  403-  417 (25.06/18.23)	AQLQ.RHSHLSEEQRA
  429-  444 (17.54/10.26)	EQLQlRSTRLIRNTSG
  450-  464 (22.48/15.50)	ARIA.RVLGIPEGQYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.57|      19|      19|     468|     486|       5
---------------------------------------------------------------------------
  468-  486 (32.61/20.13)	SAMES.AQAPTPEPELQQSL
  489-  508 (26.34/14.75)	SAVSScARNMVDYPGLSMSL
  523-  539 (20.61/ 9.83)	SAGGK.LLPPSEESLLRN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.36|      20|     287|      37|      56|       6
---------------------------------------------------------------------------
   37-   56 (33.02/17.01)	EQLDSAV.IQLQAAAAEQQQQ
  318-  338 (33.33/17.24)	EHMPSAIaVQHQHQQQQQLQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25126 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NEPVSALNADSMPRTRSGRIIRPPLPQAATAPVATEAAAPNS
2) QMLEMLVAELRDKDYRAPAAAHTPDLPAAEAYKERAVPP
3) RMQRHYVKYPEHMPSAIAVQHQHQQQQQLQQEQQQQQQQQQHQQQQHQQQQHQQQQQQQHQQQQQQQQQQQQQQQLPQQQQ
212
255
308
253
293
388










Molecular Recognition Features






MoRF SequenceStartStop




NANANA