<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25112

Description GH21761 (Fragment)
SequenceNTLQLCFIYAIFDLLCRFHSLPFEYLDEHLDDFNYDLDEAQSQAKYDARLLSEQMLSDAELQQRADIESRISSNSNVVINSNGEANFNFNTNSNSDADSEAQLAAAAASSPTEDDLEPHSRAAACFTNGHKYTHGQKVPRLDACEVCLCMDGEIFCWWEKCDKANVNRGEATATAAATAMGTTGGDYSDPYRYETTTRKSTKVHKTTRKAGKRHKHHKNQKNFNDYEVYHSRKQAPDYKKPDIMQQKQKSDSAANHSSSISGVTSSSSSSSESGNYNIIKQQKHEQQQKPAMAQQQHKKPPQQQQEFNVAAMSVNQAAKETHYQQQLPTPHQQHQHQQQQHLHAHQPHSSSKILNFPENLPALLYYDYKTEEHEHHQHQHHQQHLLHEKQRLQQQQQLQKKQQKQQLRQTQRKKQQKATLGTDLVVVKNFDEAETDSDILPEPPTKRPAMTATTTGSSTSHSNSIANPTATAATIEMVTTPHSQQAATAFVMDNTNVMQQDKETEEADDAFHRWLTSTELNIDSTNMFDDNLAAAAAAAAAEATIEQETSASTIIDDVGSISSSSSSSSSGSGRNSTTSSSNSKDNDNRHGNNIADNADAVFFRSSYNDYSSEFNGSVVNIDITLTAVDVHPHQQQQQQQQQQQQQQKLPRASTETDLIANDNQTSDVSPGVRQPTKMQPTATSTPIPAEAATTTVKSITTTMPITSSSGSSGNNSSNNNSSSNQYNLPPFTLTTIITTTPLAAGRMCNVLGKLYKIGEVLPQDTGNCLQCICTDAVTPDELPSVTCSPHNCPPLVLPDLFDATGY
Length806
PositionTail
OrganismDrosophila grimshawi (Hawaiian fruit fly) (Idiomyia grimshawi)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Hawaiian Drosophila.
Aromaticity0.06
Grand average of hydropathy-0.873
Instability index55.49
Isoelectric point5.70
Molecular weight89061.23
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25112
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     178.08|      27|      37|     281|     307|       1
---------------------------------------------------------------------------
  218-  239 (27.82/ 9.40)	KNQ..KNFNDY..............................EVYHSR.......KQAP.....DYK
  240-  298 (26.83/ 8.83)	KPDimQQKQKSdsaanhsssisgvtsssssssesgnyniikQQKHEQ.......QQKPAMAQQQHK
  299-  335 (36.86/14.64)	KPP..QQQQEF...................nvaamsvnqaaKETHYQ.......QQLPT.PHQQHQ
  336-  369 (29.19/10.20)	H....QQQQHL............................haHQPHSSskilnfpENLPALLYYDYK
  370-  398 (31.24/11.38)	TEE..HEHHQH............................qhHQQHLL.......HEKQRLQQQQQL
  631-  648 (26.15/ 8.44)	HPH..QQQQQQ..............................QQQQQQ.......QQK.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.88|      16|     298|     259|     274|       2
---------------------------------------------------------------------------
  567-  582 (27.98/13.44)	SSSSGSGRNSTTSSSN
  709-  724 (27.90/13.38)	SGSSGNNSSNNNSSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     301.90|     104|     340|      62|     201|       3
---------------------------------------------------------------------------
   62-  188 (159.32/130.95)	QQRADIESRIssnsnVVINSNGEANFNFNT.................NSNSDADSEAQLAAAAASspTEDDLEPHS.RAAACFTnghkythgqkvprLDACEVclcM..DGE......IFCWWEKCDKANVNRGE......ATATAAATAMGTTGGDYS
  415-  550 (142.58/64.60)	QQKATLGTDL.....VVVKNFDEAETDSDIlpepptkrpamtatttgSSTSHSNSIANPTATAAT..IEMVTTPHSqQAATAFV.............MDNTNV...MqqDKEteeaddAFHRWLTSTELNIDSTNmfddnlAAAAAAAAAEATIEQETS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.25|      11|      35|     695|     705|       4
---------------------------------------------------------------------------
  695-  705 (19.47/ 9.70)	TVKSITTTMPI
  732-  742 (18.78/ 9.16)	TLTTIITTTPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25112 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAAEATIEQETSASTIIDDVGSISSSSSSSSSGSGRNSTTSSSNSKDNDNRHGNNIADNADA
2) ALLYYDYKTEEHEHHQHQHHQQHLLHEKQRLQQQQQLQKKQQKQQLRQTQRKKQQKATLGTDLVVVK
3) FDEAETDSDILPEPPTKRPAMTATTTGSSTSHSNSIANPTATAATIEMVTTPHSQQAATAFVMDNTNVMQQDKETEEADDAFHRWLT
4) GEATATAAATAMGTTGGDYSDPYRYETTTRKSTKVHKTTRKAGKRHKHHKNQKNFNDYEVYHSRKQAPDYKKPDIMQQKQKSDSAANHSSSISGVTSSSSSSSESGNYNIIKQQKHEQQQKPAMAQQQHKKPPQQQQEFNVAAMSVNQAAKETHYQQQLPTPHQQHQHQQQQHLHAHQPHSSSKILNFPE
5) IDITLTAVDVHPHQQQQQQQQQQQQQQKLPRASTETDLIANDNQTSDVSPGVRQPTKMQPTATSTPIPAEAATTTVKSITTTMPITSSSGSSGNNSSNNNSSSNQYNLPP
535
362
430
169
621
600
428
516
358
730










Molecular Recognition Features






MoRF SequenceStartStop




1) ALLYYDYK
362
369