Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MSGSHAKNNSGGYGSHTVVAIPIPSIEEKNKQMQQETMMEKLRAKYRNKPKSYEDIKKSVRMYFIEKHYPLDPLCKAALQSALDKLQHYIKVSSRHGLVERLESLSRQLGLKFMEDQQLLFISTDMFYVEILLDASGNLNDVKVHHECKIEQQSNSSASSRELLNCLKAGDFADFTVQLEGLSSIYQLNAEPKVKKKAFVALQAMETDISNLYQQQLQKQQQLRGNSDSYYIMNNSPLGLVMERRGGHPMKLTYFCPPLQLIEKKVKGEKLATATASGTASRDFSIEQVMKSPNGLSATLNLEGSSANKLQILPIVSFTSESGLPLEQPSYAPLTQNNSMLMPATYVLRLNKPMPVCIESLRALALPGLGSLGVSGEGTTVMNLIVQTASRQLIKSTQKGLYVNLPKETHCYFFTDNRRLQGTLISTLPFTEPAQVPRIIAFLKKQALFCTLLSSCVREQQKQYNDMDSTVILEVTAVSLSQITVELQHPYEESLATVDFLLEDGQATCTIYCLSNDYEALSQKLTRTVRQVLSIPMVIYKLLKCWDEEHQQKLHGAIVPGAGSGAGSGTAGGFSSTGGGGGMHGTSNFGQFAMETGGGEGSSGVGGGFNSVGNLKMDSKVRSLADAFAASTSAAAAIAGLMNLKRETDPQLGEGNLPILSSSSSSASASKISENEIADKYKNIWKDKTPNLKHCVSITPIAGDGKAPPQQQVDVQRTGGIEIIPLNAPGSVVATPSAGSPATTITITPITGVGKELSKDAKKSVSSGSATKRPHESSSSSSSSSSNSNSNSSSSSSSSNSSSDTQKEKKRKKKRDDSPMGPPEKIYSRQNSPAGGGISDPVAGSGVVRKFSSPSASSSSPKAGGVGSGAGGGAALGLMSGQPARPSPKHSPVYSSPKHNSTSNTASNSPKSPFGTLSPKHGSSGKPSMSTLKSATAATSLSLSPKAEKSLSASGGGGGSNSAHPLPLASSGSGANPSMMRPVPPLASTISGITNQLSTSFKKDKPNASSCAPGAPPGVVAVPVAALKNSQQQQQLKSSVASLSHLAAGGNLSSYVAPTVAALELNALRKGLSGAGVGPGMGAAAGAVGAVSLMTSTAASTATIQTTTTASLSSTTTAVDSSATTAAAAVEAGVGLGVGAAIAPVAPIATTQIATQQQQAAGPHSSDNCSSSSASNSNSIISGAASGLSTGYMVKPSSQEGLKLTINKTGSGKRESKGGTTSSSSSTSSSASSSTGVKKQHTGLKPGVNSGPASKKAPTAAAGSSKHLFQKANSSGNLSSKLSGSSTSTSGGGLPLTKSNSTNSFQEQSVPRRRPSMGNSSGGGVQRKAQLTPSASASGSGAGVGIGSGMGAGRMSPAAMSGSMSQPPPRFDHDTDMMTILQYASPTMAASMEGFIKGLHNKFQIPKLSQRQSGNSSSSNTVGHSLTNTDQVQSHTSSGEQMQMSALASSLTGTTPSGSSGVPKPSSVASSSGSAANANDLLLSLNSSGSIDDGIDEELLASLAGE |
Length | 1506 |
Position | Middle |
Organism | Drosophila grimshawi (Hawaiian fruit fly) (Idiomyia grimshawi) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Hawaiian Drosophila. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.330 |
Instability index | 51.78 |
Isoelectric point | 9.40 |
Molecular weight | 155081.26 |
Publications | PubMed=17994087 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP25104 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.23| 16| 17| 563| 579| 2 --------------------------------------------------------------------------- 561- 577 (25.57/12.05) GAGSGAgSGTAGGFSST 597- 612 (24.66/ 7.05) GGGEGS.SGVGGGFNSV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 124.40| 23| 26| 1318| 1340| 3 --------------------------------------------------------------------------- 952- 973 (30.28/10.50) SASGGGGGSNSAHPLPLAS.SGS 1318- 1340 (42.57/18.75) GNSSGGGVQRKAQLTPSASASGS 1345- 1363 (26.97/ 8.28) GIGSGMGAGR...MSPAA.MSGS 1455- 1474 (24.57/ 6.67) TPSGSSGVPKPSSV...ASSSGS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 453.78| 72| 267| 857| 928| 4 --------------------------------------------------------------------------- 857- 928 (132.03/50.29) SS..S.........SPKAGGVGSG..AG.....GGAALG....L......MS......................GQPARPSPKHSPVYSSPKHNSTSNTASNSPKSPFGTLS.P.KHGS..SGKPS 930- 1017 (47.36/12.75) STlkSataatslslSPKAEK................SL..............sasgggggsnsahplplassgsG..ANPS.MMRPV...PPLASTISGITNQLSTSFKKDK.P.NASScaPGAPP 1042- 1121 (79.58/27.03) SL..S.........HLAAGGNLSSyvAP.....TVAALE....LnalrkgLS......................GAGVGPGMGAAAGAVGAVSLMTSTAASTATIQTTTTAS.L.SSTT..TAVDS 1126- 1197 (79.15/26.84) AA..A.........AVEA.GVGLG..VG.......AAIApvapI......AT......................TQIATQQQQAAGPHSS..DNCSSSSASNSNSIISGAAS.GlSTGY..MVKPS 1222- 1279 (68.82/22.26) SS..S.........SSTSSSASSS..TGvkkqhTGLKPG....V......NS......................G....PASKKAP...........TAAAGSSKHLF.....Q.KANS..SGNLS 1284- 1316 (46.83/12.51) GS..S.........T.......ST..SG.....GG..LP....L......................................................TKSNSTNS.FQEQSvP.RR......RPS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 141.43| 45| 139| 74| 120| 5 --------------------------------------------------------------------------- 74- 120 (67.60/61.94) LCKAALQSAlDKLQ.....HYIKVSSRHGLV.ERLESLSRQLGLkFMEDQQLL 212- 262 (73.84/56.89) LYQQQLQKQ.QQLRgnsdsYYIMNNSPLGLVmERRGGHPMKLTY.FCPPLQLI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 77.50| 24| 26| 1404| 1429| 6 --------------------------------------------------------------------------- 1404- 1429 (36.81/29.81) QIPklSQRQSGNSSSSNTVGHSLTNT 1431- 1454 (40.69/26.17) QVQ..SHTSSGEQMQMSALASSLTGT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.74| 19| 26| 718| 740| 7 --------------------------------------------------------------------------- 718- 740 (28.94/19.84) TGGIEIIPLNAPG.........SVvatpSAGS 742- 769 (25.80/ 9.54) ATTITITPITGVGkelskdakkSV....SSGS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 82.87| 26| 26| 289| 314| 8 --------------------------------------------------------------------------- 274- 291 (20.68/ 8.15) ......ATAS..GTASRDFSIEQVMK 292- 317 (42.56/26.38) SPNGLSATLNLEGSSANKLQILPIVS 320- 334 (19.64/ 7.28) SESGLP....LEQPSYAPL....... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.84| 19| 26| 453| 471| 9 --------------------------------------------------------------------------- 453- 471 (33.95/23.56) LSSCVREQQKQYNDMDSTV 480- 498 (31.90/21.69) LSQITVELQHPYEESLATV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 128.28| 42| 130| 661| 709| 10 --------------------------------------------------------------------------- 661- 705 (63.19/46.68) SSSSSSASASKiSENEIADKYKNiWKDKTP.............NLKHCVSiTPIAGDG 792- 846 (65.09/28.35) SSSSSSSSNSS.SDTQKEKKRKK.KRDDSPmgppekiysrqnsPAGGGIS.DPVAGSG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 38.47| 12| 26| 511| 525| 11 --------------------------------------------------------------------------- 511- 525 (18.28/17.59) IY....CLSNDYEalsQKL 539- 554 (20.19/10.75) IYkllkCWDEEHQ...QKL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EKIYSRQ 2) TAATSLSL | 824 936 | 830 943 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab