Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MSGSHAKNNSGGYGSHTVVAIPIPSIEEKNKQMQQETMMEKLRAKYRNKPKSYEDIKKSVRMYFIEKHYPLDPLCKAALQSALDKLQHYIKVSSRHGLVERLESLSRQLGLKFMEDQQLLFISTDMFYVEILLDASGNLNDVKVHHECKIEQQSNSSASSRELLNCLKAGDFADFTVQLEGLSSIYQLNAEPKVKKKAFVALQAMETDISNLYQQQLQKQQQLRGNSDSYYIMNNSSLGLVMERRGGHPMKLTYFCPPLQLIEKKVKAEKLATATASGTASRDFSIEQVMKSPNGLSATLNLEGSSANKLQILPIVSFTSESGLPLEQPSYAPLTQNNSMLMPATYVLRLNKPMPVCIESLRALALPGLGSLGVSGEGTTVMNLIVQTASRQLIKSTQKGLYVNLPKETHCYFFTDNRRLQGTLISTLPFTEPAQVPRIIAFLKKQALFCTLLSSCVREQQKQYNDMDSTVILEVTAVSLSQITVELQHPYEESLATVDFLLEDGQATCTIYCLSNDYEALSQKLTRTVRQVLSIPMVIYKLLKCWDEEHQQKLHGAIVPGAGSGAGSGTAGGFSSTGGGGGMHGTSNFGQFAMETGGGEGSSGVGGGFNSVGNLKMDSKVRSLADAFAASTSAAAAIAGLMNLKRETDPQLGEGNIPILSSSSSSASASKASENEIADKYKNIWKDKTPNLKHCVSITPIAGDGKAPPQQQVDVQRTGGIEIIPLNAPGSVVATPSAGSPATTITITPITGVGKELSKDAKKSVSSGSATKRPHESSSSSSSSSNSNSNSSSSSSSSNSSSDTQKEKKRKKKRDDSPMGPPEKIYSRQNSPAGGGISDPVAGSGVVRKFSSPSASSSSSPKPGGMGSGAGGGAALGLMSGQPARPSPKHSPVYSSPKHNSSSNTASNSPKSPFGTLSPKHGSSGKPSMSTLKSATAATSLSLSPKAEKSLSASGGGGGSNSVHPLPLASSGSGANPSMMRPVPPLASTISGITNQLSTSFKKDKSNASSCAPGAPPGVVAVPVAALKNSQQQQQLKSSVASLSHLAAGGNLSSYVAPTVAALELNALRKGLSGAGVGPGMGAAAGAVGAVSLMTSTAASTATIQTTTTASLSSTTTAVDSSDTAATTTAAAAAAVEAGVGLGVGAAIAPVAPIATTQIATQQQQAAGPHSSDNCSPSSASNSNSIISGAASGLSTGYMVKPSSQEGLKLTINKTGSGKRESKGGTTASSSSTSSSASSSTGVKKQHTGLKPGVNSGPASKKAPSAAAGSSKHLFQKANSSGNLSSKLSGSSTSTSGGGLPLTKSNSTNSFQEQSVPRRRPSMGNSSGGGVQRKAQLTPSASASGSGAGVGIGSGMGAGRMSPAAMSGSMSQPPPRFDHRTDMMTILQYASPTMAASMEGFIKGLHNKFQIPKLSQRQSGNSSSSSTVGHSLTNTDQVQSESAAASSSMEQQQMSALASSLTGTMPSGSSGVLKLSPVASSGSAANANDLLLSLNSSGSIGDGIDEELLASLAGE |
Length | 1515 |
Position | Middle |
Organism | Drosophila grimshawi (Hawaiian fruit fly) (Idiomyia grimshawi) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Hawaiian Drosophila. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.315 |
Instability index | 53.30 |
Isoelectric point | 9.42 |
Molecular weight | 155906.32 |
Publications | PubMed=17994087 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP25103 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.99| 25| 28| 1274| 1299| 1 --------------------------------------------------------------------------- 1259- 1283 (32.26/ 7.98) ASKK.APSAAAGSSKHL.FQKANSSGN 1284- 1310 (28.73/ 8.85) LSSKlSGSSTSTSGGGLpLTKSNSTNS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 739.43| 112| 113| 687| 798| 2 --------------------------------------------------------------------------- 630- 713 (88.95/24.92) ...............................................................ASTSAAAAIAGL.MNLKRETD.PQLGE...........G.NI...PILSSSSSSASAS..........KASENEI......ADKYK.......niwkD..K.T...PN...LKHCV.SITPIAGDGK.....AP..PQQQV 714- 826 (147.21/46.54) DVQRT...G..G....IEIIP.LNAPGSV..VATPS..AGSP.....................ATTITITPITGVGKELSKDAK.KSVSS...........G.SATKRPHESSSSSSSSSN..........SNSNSSS......SSSSS.......nsssDtqK.E...KK...RKKKR.DDSPM..........GP..PEKIY 827- 951 (124.96/38.28) SRQNSpagG..G....IS.DP.VAGSGVVrkFSSPS..ASSS.....................SSP...KP.GGMGSGAGGGAA.LGLMS...........GqPARPSPKHSPVYSSPKHN..........SSSNTAS......NSPKSpfgtlspkhgsS..G.K...PSmstLKSAT.AATSLSLSPK.....A....EKSL 952- 1065 (108.64/32.23) SASGG...G..GgsnsVHPLP.LASSGS...GANPS..MMRP.....................VPPLAST.ISGITNQLSTSFK.K........................DKSNASSCAPG..........APPGVVA......VPVAA.......lknsQ..Q.Q...QQ...LKSSVaSLSHLAAGGNlssyvAPtvAALEL 1066- 1165 (84.68/23.34) NALRK...GlsG....AGVGPgMGAAAGA..VGAVSlmTSTA.....................ASTATIQ..TTTTASLSSTTT.AVDSS...........D.TAATTTAAAAAAVEAGVG..........LGVGAA...........................iA...P...........VAPIATTQI.....AT..QQQQ. 1166- 1258 (93.22/26.51) ....A...A..G........P.HSSDN.....CSPS..SASN.....................SNSI....ISGAASGLSTGYM.VKPSSqeglkltinktG.SG.KRESKGGTTASSSST..........SSSASSS......TGVKK...........Q..H.T....G...LKPGV.NSGP.................... 1342- 1484 (91.77/25.97) SASGS...G.aG....VGIG...SGMGAG..RMSPA..AMSGsmsqppprfdhrtdmmtilqyASPTMAASMEGFIKGLHNKFQiPKLSQ................RQSGNSSSSSTVGHSltntdqvqseSAAASSSmeqqqmSALAS...........S..L.TgtmPS...GSSGVlKLSPVASSGS.....A........ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 87.37| 17| 17| 563| 579| 3 --------------------------------------------------------------------------- 562- 578 (32.28/16.40) AGSG.AGSGTAGGFS.STG 579- 597 (24.15/ 9.84) GGGGmHGTSNFGQFAmETG 598- 613 (30.94/15.32) GGEG.S.SGVGGGFN.SVG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.84| 19| 26| 453| 471| 4 --------------------------------------------------------------------------- 453- 471 (33.95/23.94) LSSCVREQQKQYNDMDSTV 480- 498 (31.90/22.04) LSQITVELQHPYEESLATV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.93| 16| 17| 54| 69| 6 --------------------------------------------------------------------------- 54- 69 (27.97/22.47) EDIKKSVRMYFIEK..HY 72- 89 (22.96/16.94) DPLCKAALQSALDKlqHY --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.18| 18| 71| 293| 310| 7 --------------------------------------------------------------------------- 293- 310 (28.93/11.80) PNGLSATLNLEGSSANKL 317- 334 (31.25/13.29) SFTSESGLPLEQPSYAPL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EKIYSRQ 2) TAATSL | 823 936 | 829 941 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab