<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25098

Description GM17687
SequenceMEVDQIPLADVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAANLLEPVCSTYGPFMQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLDQTSVQRHCILICNSPPYQMPTTESWKYPGKSCEQLAALFNERKINLSIIAPRKMPVLFKLFMKADGDQPITSKNYAKNIRHLVLLKGYSLKERAPSPNSMAAQMAAPNAAQATVQQQQQQQQNQAGQQQQGQGMPMDTTPAQQQQQQQQQQQQQQGNPQQQVMNMNTMQQQQPGPNPPAGLLNPQQQQQLLQQQQQNQFVSNQMQNPNFQQNVGPGQNRWMYPNQPGQARPPFMQGAGNVGGVGQGGGMQQNQNSALISRINAPPPNQTVTSLQQQQAQQQQQQQAQQQQQQRMQMLSQQQMLNHQQLQQQQQLAQQQQQQQQGQQQQQGNPNAGNNMMPASNTGNMSNPQQQQQQVGQQSNPQQQVNPQQQQQGNSQQEQASLREKIWTGILEWSEKPKSDQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLMPKHLVGNIGGQFLKDSKMVVFRPTPGEALDSLAKMMTSGYAGCVHFSSIPNSPACDLKVLILLYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQMMQQQGKSPMELQQQQQQQQQQQQMQQDNSQQQHYNQFQLNMQMGGGGPGGGPGPGPGGMPMQQNQMQMNMMQQQRMPLGVGVGVGVGPGGVPNPNLQQQLQQVAPNVAAMQQQQAQQQQQRMVRPMMSNNNPGLRQLLQHQTTPGNQFRPQMGGQNPNQMGAGGPMVGNRNFDDGNYEFM
Length856
PositionUnknown
OrganismDrosophila sechellia (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.05
Grand average of hydropathy-0.900
Instability index61.81
Isoelectric point8.77
Molecular weight95805.87
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
nervous system development	GO:0007399	IEA:EnsemblMetazoa
positive regulation of antibacterial peptide biosynthetic process	GO:0006963	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25098
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     303.15|      42|      42|     422|     463|       1
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  270-  319 (64.39/11.19)	PAQQ..QQQQQQQQQQQQGNPQ.qQVMNMntMQQQQpgpnppagLLNP...QQQQQ
  320-  362 (56.41/ 8.67)	LLQQ..QQQNQFVSNQMQ.NPNfqQNVGP..GQNRW........MYPNQPGQARPP
  408-  443 (57.09/ 8.88)	.AQQ..QQQQQ.AQQ......QqqQRMQM..LSQQQ........MLNHQQLQQQQQ
  444-  486 (73.36/14.02)	LAQQ..QQQQQQGQQQQQGNPNagNNMMP..ASNTG........NMSNPQ.QQQQQ
  779-  819 (51.90/ 7.24)	VAPNvaAMQQQQAQQQQQ...R..MVRPM..MSNNN........PGLRQLLQHQTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.68|      22|      22|     668|     689|       2
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  668-  689 (45.68/13.39)	QQQQQQQQM.MQQQGKSPMELQQ
  691-  706 (32.52/ 6.62)	QQQQQQQQQ.MQQDN....S..Q
  707-  729 (34.48/ 7.63)	QQHYNQFQLnMQMGGGGPGGGPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.66|      66|     112|      32|     100|      11
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   32-  100 (105.00/85.45)	YILPTLE..HFTTGSIDEREYLIAERFATLyGIVVYRTAANLLEPVCSTYGPfmQP...QKVMETIERLPLVGG
  147-  217 (105.66/73.29)	YQMPTTEswKYPGKSCEQLAALFNERKINL.SIIAPRKMPVLFKLFMKADGD..QPitsKNYAKNIRHLVLLKG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.73|      21|     386|     366|     406|      12
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  366-  406 (28.08/32.69)	GAGNVGGVGQGGgmqqnqnsalisrinAPPPNqtvtsLQQQ
  755-  775 (43.65/19.88)	GVGVGVGVGPGG...............VPNPN.....LQQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25098 with Med25 domain of Kingdom Metazoa
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