<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25064

Description GL18136
SequenceMNQNQIQQLTSHLSQALDQNYDVVNMDAVLSVICALEGTTITKEQLEATRLAKYINQLRRRTKNEHLARRAKSLLKMWREMVGIQQTANDSQHHHSQPTSLPTPPSAHFYKYTAGSADSNLTETVVHLPVSPSVPSHRTISDLHSNIDSSEPPPAVLPSQHQSNFLNLINNISKCEREESNSSMLIQAHKQPQSQQFQNRPLGLPLPFISEQSLNSVSISSDVGNDKKGEASIVIDIVTDSDENDNESASTIQGKPTAAASAPFTISPAPCPRPKKFKKDKKHKERDRSKSSLLAQNELIGQHSSRYSAKVKEGQSQTAQATDSEIFSLSNSSMSSILSGDAALLNPQHKFRANASELTFTGRFKPVNHLDSANQDNSALPIGQNIVFRQNESERPIFEDSITNDSSTSCSRLSPPTVEERRKSDKIDDSIRQQIATSIQMPMPSIGLGHESNSRTEYLENSSKSQVPKKRGRKKGSKGVDAVIAKESSSLSQQIFFGVGSTVKKVKTTKELFSEIQSRKLITAVQSPTSNISNSSISRELTTRALIPRPTSSCSDTSIHSPQIMETYSGNVTLMGVDKFSNKNEDAGNTG
Length591
PositionUnknown
OrganismDrosophila persimilis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.04
Grand average of hydropathy-0.690
Instability index58.13
Isoelectric point8.94
Molecular weight64886.57
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25064
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     537.94|     104|     108|     285|     388|       1
---------------------------------------------------------------------------
   70-  165 (117.14/56.20)	...RAKSLLKMWREMVGIQQTANDSQH.....HHSQP.TSLPTPPS...AHFyKYTAGSADSNL....TETVVH.LpvSPSVPSHRTISDLH...........SNIDSSEPPPAVLPSQHQSNF
  176-  277 (129.11/62.69)	EREESNSSMLIQA.....HKQPQSQQF.....QNRPL.GLPLPFIS...EQ..SLNSVSISSDVgndkKGEASIvI..DIVTDSDENDNESAS...TIQGKPTA.AASAPFTISPAPCPRPKKF
  285-  388 (159.19/79.00)	ERDRSKSSLLAQNELIGQHSSRYSAKV.....KEGQS.QTAQATDS...EIF.SLSNSSMSSIL....SGDAAL.L..NPQHKFRANASELTF...TGRFKPVNHLDSANQDNSALPIGQNIVF
  394-  482 (91.28/42.18)	ERPIFEDSITNDS...STSCSRLSPPT.....VEERR.KSDKIDDSirqQIA.TSIQMPMPSIG....LGHES.....NSRTEYLENSSKSQVpkkRGRKKGSKGVDA................
  486-  550 (41.22/15.05)	....KESSSLSQQIFFGVGSTVKKVKTtkelfSEIQSrKLITAVQS...PTS.NISNSSISREL....TTRALI.P..RP............................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25064 with Med26 domain of Kingdom Metazoa
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