<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25062

Description GL10134
SequenceMETQIIDTVNDFLKVDSIDEAFGSVIVFKPNGEEDKAKNFSNDLVTAFGNVAQEHREHVLRLYLLRAASASSYHMRVMMAALVKLVDAHVITAWMLCDKVLMCEKLDYEHKTFWIESFRLIKKVIMQVDYKGVREIMKVCRDKAQWFPLNVNVTYMPQLLAVEEILRFLFDRNNCLLPAYFVANEIMRPFPYHWKLNKLMTDFVEEFRTTAQMVSIIGHANMLPIVEHFGYADHMMNSWRLDHNTLKFNFKGSLPYEPELLEEQRPLLRYVLEQPYSREMVSQMLNLQKHQKQRYNALEEQLVNLIIHAMEMTESNDTTAGSGFNSSDEQITSNEWVWLHLSSQLIYFVLFQFVSFMHIVLSLHEKLSKLELRKGRDQLMWILLQFISGSIQKNPITNFLPVFRLFDLLYPEQEPLKLPDINKSSMVRQMAPICVWIHLMKKARVENMNITRPLPIALKNHHDFLQHLVSPNTMMNMTLGNDFRIILVCNAYSTNQEYFGRPMGLLLEALNGTSKSPNGAQIPAVNFSVAVLDSLTVHSKMSLIHSFVTQMLKQAQTKGQVPAAALLETYARLLVYTEIESLGVKGFLSQLMPTVFKNHAWAMLHTLMEMFSYRLHHVPTHYRVQLLSLLHSLSSVPQTNKMQLNLCFESTGLRLITSIGSAEFQPQFSRYFNDKSPGAVASNESEELNRVLILTLARSMHVHGGGDEMQSWCKDFLANIMQHTPHSWSLQSLACFPPALNEYFTQNAQPPENKQQLKKSVEEEYRTWTSMTSENDIIAHFLRPTTNPLFLCLLFKIIWETESISPVAYKILEGISARALTTHLRKFCDYLVAEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRTHEGNEAQVCFLIIQLLLLKASELRNRVQEFCKDNNPDHWKQSNWQDKHLSFHQKYPEKFALDESASHLALPVYFSNVCLRFLPVLDVVVHRFIELTIPNVHQILGFILDHLSILYKFHDRPITYLYNTLHYYERILRERPPLKKKLVSTITGAFSDIRPPNWSVSEPYKVFLQNQDLLWNPELSYYMNLIKRLSETISGKNVFYTTDWRFNEFPNAPAHALYVTCVELLGLPVAPALVANNLIDVIVSGYAVIPQKEIHSYINAVGIVMAALPEPYWTGIYDRLKEMLNTPNMLNWTYRFNAFELFNFKTVREAMLEKSYAVVLAVAHSVFHHMGVFKLAAMTRNIKEKLKPCVHTEQQLLYLCHVFGPFMKRIELETPNAVAGIAILLYEILEVVDKHSGSRPLQYVDQICDFLYHIKYIHVGNTIKNESEAIIKRLRPLLQMRLRFISYLNLEDIHAEKIAESNANSVTNQTQSPLQPQHQQQQQPMQQQQQPMHQQQQPMQQQQQPMLHQQQPMMQQQQPMQQQQQSMQQQQPMQQQQVNAAQTTSVPLGSGGNPQQQQLNQQQQMYMQHMQQQQQQQQQQHMQSMGMRHN
Length1469
PositionTail
OrganismDrosophila persimilis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.10
Grand average of hydropathy-0.217
Instability index44.20
Isoelectric point7.26
Molecular weight170507.31
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25062
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     215.73|      19|      19|    1367|    1385|       1
---------------------------------------------------------------------------
 1350- 1364 (29.02/ 9.60)	.QSPL.QPQ.H..QQQQQPM
 1367- 1385 (47.49/19.64)	QQQPMHQQQ.QPMQQQQQPM
 1388- 1406 (44.59/18.07)	QQQPMMQQQ.QPMQQQQQSM
 1408- 1427 (28.10/ 9.10)	QQQPMQQQQvNAAQTTSVPL
 1430- 1446 (34.00/12.31)	GGNP..QQQ.QLNQQQQMYM
 1447- 1461 (32.53/11.51)	Q....HMQQ.QQQQQQQQHM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.03|      16|      20|    1152|    1170|       2
---------------------------------------------------------------------------
 1144- 1159 (28.94/10.76)	MAALPEP.YWTGIYDRL
 1162- 1178 (27.09/19.90)	MLNTPNMlNWTYRFNAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.83|      14|      20|     157|     176|       4
---------------------------------------------------------------------------
  157-  170 (23.87/29.22)	PQLLAVEEILR.FLF
  178-  192 (22.96/ 8.35)	PAYFVANEIMRpFPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.59|      16|      20|    1078|    1093|       5
---------------------------------------------------------------------------
 1078- 1093 (32.88/22.42)	FYTTDWRFNEFPNAPA
 1096- 1111 (28.72/18.55)	LYVTCVELLGLPVAPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.68|      14|      20|     200|     213|       6
---------------------------------------------------------------------------
  200-  213 (25.26/15.34)	MTDFVEEFRTTAQM
  222-  235 (27.42/17.26)	MLPIVEHFGYADHM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.47|      12|      25|      96|     109|       7
---------------------------------------------------------------------------
   96-  109 (18.01/16.75)	LCDKVLMceKLDYE
  120-  131 (20.45/10.98)	LIKKVIM..QVDYK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      15|      25|     593|     607|       8
---------------------------------------------------------------------------
  593-  607 (28.99/20.85)	PTVFKNHAWAMLHTL
  619-  633 (26.44/18.24)	PTHYRVQLLSLLHSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.96|      25|      26|     959|     983|      10
---------------------------------------------------------------------------
  952-  974 (36.42/25.82)	VC..LRF...LP.........VLDVVVHRFIELTIPN
  975-  999 (41.31/30.47)	VHQILGF...IL.........DHLSILYKFHDRPITY
 1000- 1036 (27.23/17.08)	LYNTLHYyerILrerpplkkkLVSTITGAFSDIRPPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.75|      13|      19|     741|     753|      11
---------------------------------------------------------------------------
  741-  753 (25.09/16.68)	NEYFTQNAQPPEN
  763-  775 (24.66/16.26)	EEYRTWTSMTSEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.50|      17|      26|    1257|    1276|      12
---------------------------------------------------------------------------
 1257- 1276 (23.33/25.38)	VAGIAILLYEILEVvdkHSG
 1283- 1299 (33.17/24.92)	VDQICDFLYHIKYI...HVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.97|      18|      19|     696|     713|      13
---------------------------------------------------------------------------
  696-  713 (36.26/19.37)	LARSMHVHGGGDEMQSW.C
  717-  735 (30.70/15.39)	LANIMQHTPHSWSLQSLaC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.33|      20|      26|     432|     451|      14
---------------------------------------------------------------------------
  432-  451 (37.93/22.47)	PICVWIH..LMKKARVEN..MNIT
  455-  478 (27.40/14.23)	PIALKNHhdFLQHLVSPNtmMNMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.98|      12|     486|      30|      41|      16
---------------------------------------------------------------------------
   30-   41 (23.28/19.62)	PNGEEDKAKNFS
  517-  528 (23.70/20.15)	PNGAQIPAVNFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.79|      18|      19|     894|     912|      21
---------------------------------------------------------------------------
  894-  912 (25.76/17.76)	KASELRNRVQEFcKDNNPD
  915-  932 (34.03/18.26)	KQSNWQDKHLSF.HQKYPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25062 with Med23 domain of Kingdom Metazoa
Unable to open file!