<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25007

Description Uncharacterized protein
SequenceMPVVGNDEQTQELQAFLIRCWKERWKPSRWAMKVRKFLLAKENSSKMLAELLLKQIFIGTIPNELLLSYMNYATTTQLISHTTFYSTIAQLVDFSKPRCMNRILELVILILPSTSCKTREDSLDLAKALLSLLSWLQTVCIMSIRFSQAGVTELCNAALTLILDNQNLCGLIRIGSFNSTELWNVVNQLGEQLCEVDMSMLAEKPRNKLLRIASKIARLTNHQFDGNPSMQQNSKDGGPSTSIQLIIYIQSLIRPLNSEETIACLLESVDSFKRINPCDFFVELYRACLTAISESASGSWDEVKIVCFTHFKLPKIIKALLRRSFMQQLISQHGLSFMKLTRLANLLDVIDKKLRCDTVSAIATSLRLENIITAKGFEELIKSRPEKSDDMNECNLYKQMDDAKSYLDRLLQLINAGDIVEVRSQINYFIDHMDVVLATAACSGCMKNLALALIRLNDSIKRQTSRGDHLQLFDVTFILLCSVIQRYGKQILTDDNQSTVNSFFYQWANQYLHEEYPFESQAQQVPKSASISVPCTPTQSILTMATDTVDSMLSVFTKSYDTEFDYSNLYQMCMMASGFVKEIIKPWHLNFISESTVKQYLDRLKGKASCLSIAIYAAWYKIALRSSSSERKKCFSCLNHIMENLKKEEAENANDKSRLNKLQLQREILSRICPENSLIEEKTRNNSTLAYYVYDAYILKLLFMGVNIISSSPLFLIVLVNSCGSDVFMQSKNSPYEIVSDIFSEFMTKRWLGCAQISNIFKLWSATSSDWFCEALLQMLNEDRGKDNCIMIADAIACLTLIHPTELIPTVFVQVIQHHLKPTIHQWKARALAHVLVRCMQFGLTYSGGTNSSATNGERPPKIQRVDEPFDSSSEASLAIYCMETAMDTESVLVENGYDDNRAESCFGKVFIAILETLLLKFREIFEKNHIGPSVTFAMYFLQRYCLTNMDLFLKPGLRKLAIDLIPLIPGQVSVDLLLRLHDLNLEEHRRDCAKYLAYPQMISK
Length1005
PositionTail
OrganismTrichoplax adhaerens (Trichoplax reptans)
KingdomMetazoa
LineageEukaryota> Metazoa> Placozoa> Trichoplacidae> Trichoplax.
Aromaticity0.09
Grand average of hydropathy-0.028
Instability index47.33
Isoelectric point7.17
Molecular weight114449.61
Publications
PubMed=18719581

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25007
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.44|      39|     507|     428|     474|       1
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  428-  474 (57.16/54.94)	YFID.....HMDVVLATAacsgcMKNLALALIRLndsIKRQTSRGDHLQLFD
  940-  983 (63.28/38.69)	YFLQrycltNMDLFLKPG.....LRKLAIDLIPL...IPGQVSVDLLLRLHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.69|      48|     507|     287|     337|       2
---------------------------------------------------------------------------
  287-  337 (71.52/63.62)	ACLTAISESASGSWDEVKIVCFtHFKlPkIIKALLRRSFMQQLIS..QHGLSF
  797-  846 (81.17/57.00)	ACLTLIHPTELIPTVFVQVIQH.HLK.P.TIHQWKARALAHVLVRcmQFGLTY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.73|      59|     176|     549|     614|       3
---------------------------------------------------------------------------
  555-  614 (101.01/74.00)	VFTKSYDTEFD.YSNLYQMCM....MASGFVKEIIKPWHL...NFISESTVkQYLDRLKGKASCLSIA
  727-  793 (92.72/52.43)	VFMQSKNSPYEiVSDIFSEFMtkrwLGCAQISNIFKLWSAtssDWFCEALL.QMLNEDRGKDNCIMIA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.63|      36|     852|      31|      69|       5
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   31-   69 (50.17/40.07)	AMKVRKFLLakENS.SKMLAELLLKQIFIgTIPNELLLSY
  886-  922 (56.46/34.14)	AMDTESVLV..ENGyDDNRAESCFGKVFI.AILETLLLKF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.77|      20|     536|      84|     105|       8
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   84-  105 (29.64/30.87)	FYStIAqLVDFSKPR.....CMNRILE
  619-  643 (33.13/22.69)	WYK.IA.LRSSSSERkkcfsCLNHIME
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25007 with Med24 domain of Kingdom Metazoa
Unable to open file!