<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP25005

Description Uncharacterized protein (Fragment)
SequenceQESDKERMEFIVNYIYSNANFHQMDAYFQLMVTAIDKGVIPARVVCETLLSTPLLRCNNDGYWKNTFQLIREVIRGVDYKCCRDLLKIILAKICQVESIENRTQLHLFHYAVRVLEYILDRDTCILPAYLSVNEVRMISLSMAFMKYLIIFLLTEVITRFINSFEGLATILTESGRPYLRPVVGYVGVLNSMWKLNPGNLKYVIKERIPYDAEYLMPQRELLRYLLLQPYSREIMQNVLSVSKGLQNKCQWPLVEEVFVDVLITAMRESDDSEKSKILWQHLTSQLLHYIFFVHSISLKELVKSLLDKLYEINLRRGRDYLMWTMLHCTCLVIQKQSLDEFIILIQLFEFLYPEKRPLPIPDCSKPTSVQALATACIWIQLSKKVLLNLKIVRVLVWFIFYFYLSDRFIEDCFNKHLTTIDYHIAIVCNAYSINSDTQFVATNVILDACLGNGKTKVALPGLNCVASGATVPISSSLLDSLSVHVKSSFIYKVVNRISKMASTQAPLNLSPAVVETYSRILICNEVELFGIKQFVGQLFLQIVKSNAWNFLHAMLEILSYRLHHIQAHYRFQLLPHIYTLSGMSQTNTQQLQLSIENSALRLISGLSSCDVYPELSRSPNPEQLLSQESEELNKAFVLMLARAMHVTGLESPYGNWLENILRQIMEATPHCWPSHTLQCFPAPFKTFYNTHRHTPDSKATLRTKVDEEYRTWKSMGENETVNYFTQQNTSNVFLCVMWRLLLETNRLSSVCYRILERIGAKRWSSHIRVFADFIVYEFSSAAGSRHASKCIQILNDLIWKYNVVTLDRLILYLALRSHEGNEAQVCFFIIQLLLLKPAEFRTRVNSFVRDNSPCHWKQNDYYEKHMNYHRRWTEKFYFEGLQELSQSLPTSVNHYLPIYFGNVCLRFIPVLDIVIHRFIEMPPVSKSLETVLDHLGCLYKFHDRPITYLYDTLHYYEKHLINYPQIKKKLVGTITGNFHKYTIQFLLLYLSDGFQSYLSHVEEPDREPWKPTKTYYQDLVRRLINDILLNPTLSIDCDWRFNEFANAASHFLYTSCVELLALPVTGQDVGRALFDLAPLNESFEARSSIMSWINAVALILVSLPETYWNVVYEKVLEILKTATPTNSGKRKFHSAFVDNFTYNQTKYNFLHHHRFMSESYPSYVLAMAHAIWHHSSIGQLTLMLRFLKDKVKPIIQTEEQFILVCHLVGPFLPRFHLERTRSLLKVVVDLYEMLLIVDQTSPTMNYVDTICDFFYHIKYMFVGDSLKEEVDKIIPKLSSPLRLRLRFMTTQQVGDKQSLNVEWSH
Length1305
PositionTail
OrganismTrichoplax adhaerens (Trichoplax reptans)
KingdomMetazoa
LineageEukaryota> Metazoa> Placozoa> Trichoplacidae> Trichoplax.
Aromaticity0.12
Grand average of hydropathy-0.008
Instability index42.74
Isoelectric point8.29
Molecular weight152266.17
Publications
PubMed=18719581

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP25005
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     369.10|     123|     605|     186|     568|       1
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  432-  568 (178.82/296.66)	SINSDTQF.....VATNVILDACLgngkTKVALPglncvASGATVpiSSSLLD....SLSVHVKSSfIYKVVNRISkMASTQAPLNLSPAVVETYSRILICNEVELFGIKQFvGQLFLQIVKSN..AWNFLHA...MLEIL.SYRL...HHIQAH
 1034- 1174 (190.28/93.69)	SIDCDWRFnefanAASHFLYTSCV....ELLALP.....VTGQDV..GRALFDlaplNESFEARSS.IMSWINAVA.LILVSLPETYWNVVYEKVLEILKTATPTNSGKRKF.HSAFVDNFTYNqtKYNFLHHhrfMSESYpSYVLamaHAIWHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     260.63|      83|     605|     186|     365|       2
---------------------------------------------------------------------------
   37-  119 (144.09/59.11)	KGVIPARVV..CETLLST.PLLR.CNNDGYWKNTFQLIREVIRGVDYKCCRDLLKIILAK..ICQV.ESIEN.RTQLHLFHYAVRVLEYIL
  201-  291 (116.55/211.32)	KYVIKERIPydAEYLMPQrELLRyLLLQPYSREIMQNVLSVSKGLQNKCQWPLVEEVFVDvlITAMrESDDSeKSKILWQHLTSQLLHYIF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.47|      62|     152|     790|     871|       3
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  790-  868 (90.21/110.96)	CIQILNDLIWKY.............NVVTldRLILYLALRSHEgneaqvcfFI........IQLLLLKPA...EFRTRVNSFVRDNspCHwkqndYYEKHM.NY
  877-  963 (87.26/54.99)	YFEGLQELSQSLptsvnhylpiyfgNVCL..RFIPVLDIVIHR........FIemppvsksLETVLDHLGclyKFHDRPITYLYDT..LH.....YYEKHLiNY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.04|      47|     832|     146|     197|       6
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  146-  197 (74.13/67.27)	KYLIIFLLteviTRFINSFEGLATILTESGRPYLRPVVGYVGVL.....NSMWkLNP
  980- 1031 (80.90/57.99)	KYTIQFLL....LYLSDGFQSYLSHVEEPDREPWKPTKTYYQDLvrrliNDIL.LNP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP25005 with Med23 domain of Kingdom Metazoa
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